Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10763 181 1e-40 seq5810 138 1e-27 seq10338 93.3 5e-14 seq10051 82.4 1e-10 >seq10763 Length=10051 Score = 181 bits (200), Expect = 1e-40 Identities = 1141/1812 (63%), Gaps = 47/1812 (3%) Strand=Plus/Minus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 |||||||||||||| || |||||||| || ||||||| | | |||||| |||| | Sbjct 6128 CGGAGATAGTACATTCCAGTCTTGAGACCCAATTTCCATCCAGCGAAATGCATGGAAGTG 6069 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482 | |||| ||| || || | |||| | |||||| |||| ||| |||||||| Sbjct 6068 ATCTTGCCCATTGTAGGGTCCTTCATGTGAATGTTCATCGATTGAGATTGATCAATGAAA 6009 Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTG 110539 || || | ||| ||||| | || | | ||| | | | ||||||||||| || Sbjct 6008 GCACCACGGTCTGCGGCCATTTGAACAATGT--TTCGT-TGAGAGATTTCCCAAACGGTC 5952 Query 110540 CGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCC 110599 |||||| || || || |||| || | | ||||| || |||||||| || Sbjct 5951 TTGTAGAGAGCTTTAATCTCGGCTGGAATGTTGGGAATATTTTGAATGGAACCACCA--- 5895 Query 110600 TTCACC-ATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATT 110655 ||| | |||| ||| |||||| | | ||||| || || || | | || || Sbjct 5894 -TCAGCGATGATACGATTCTTCATGTTATCAGACCAAAGTCCCATGTCGACCAAATCCTT 5836 Query 110656 GACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTT 110715 | || ||| || | |||||||| || | | | ||| ||||| Sbjct 5835 AAGAAGCCATGGGTTAACGACTTGGAACTCACCGGCCAACACACGGCGTGAGTAAATGTT 5776 Query 110716 TGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 110775 | |||||||| || || |||||||| ||| | ||||| | ||| ||| ||||| Sbjct 5775 GGAAGTGTATGGCTCGAAACATTCATTGAAACCGAGAATTTGAGATGTGCTGGCAGTTGG 5716 Query 110776 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835 ||| || || | | | ||| || || | ||| | | |||||| || ||||||| Sbjct 5715 CATAGGAGCAACAAGCAAACTATTCCGGATACCATGTTGCTTGATAGATTGCTTGAGAGA 5656 Query 110836 ATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893 |||||| || | || | | || | || ||||||| ||| | |||||| | || Sbjct 5655 ATCCCAATCCCAAA-GATCCGTAGGAGTAACAC-CCCACATATCATATTGAAGCTCACCC 5598 Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCA-CA 110952 | ||| | ||||| || ||| | | || || | ||| | | || | | | || Sbjct 5597 TTGGAGACTGGAGATCCTTCATATGACTCGTATGGGCCTAATTCCTTGGCTATCTGAACA 5538 Query 110953 GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGC 111012 | | || | | | |||| || ||||| |||||||| | || | | ||| || Sbjct 5537 GATGAAGTCAAAGCAC-CGTGGTAGATGGTCTCAAAGATTTGGATGTTGAGATGCTTCGC 5479 Query 111013 TTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACC 111072 ||| |||||| |||| | ||| | || |||| || |||||||||||||| Sbjct 5478 TTCGGGTGAATCGAATGGTAAACGGAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACC 5419 Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATT 111132 | | ||||||||| || || | ||| ||| || || |||||||| |||| Sbjct 5418 AACAGCAATAGGTCGATGACGGAAATTGCTTCTTCTGGCTTCTTCGACGGGATAGTAATT 5359 Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192 | || || | ||| | ||| || ||||| | || || ||||| |||| Sbjct 5358 GATATCGATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCGTGAAGCTTTTG 5299 Query 111193 ATAATCAAAAGTGCGAGTCTCTTC---ATTGACATACTTTGGAAGGGCGATTGATGCCAA 111249 ||||| |||| | ||| | |||||| | |||| || || || || ||||| Sbjct 5298 GAAATCATAAGTTC---CCTCGGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGCCAA 5242 Query 111250 ATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGA 111309 ||| || ||| |||||| | | ||| || | ||||| || || |||||||| Sbjct 5241 ATTACAGCAAGCAACCTCATCAGGTGCAGAGTATTCGACGATTTCCGTGCACAAGTTGGA 5182 Query 111310 ACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAG 111369 || || || || | ||||||||| || ||||| |||||||| ||||| ||||| || Sbjct 5181 GCTGCGGATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAG 5122 Query 111370 CATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGG 111428 |||| | || | || ||||| ||||||| | ||| |||| | ||||| | | | | Sbjct 5121 CATGAAAGGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTGAGC 5062 Query 111429 CTGGTACAATGGCGTT--GGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAA 111485 || | || | || |||| | || | |||||| || || ||||||| Sbjct 5061 CTTG----ATAGTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCTTCAA 5006 Query 111486 ACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 111545 |||| ||||| | || | | || || | || || || | || | ||| | Sbjct 5005 ACTCATCACCATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAAT 4946 Query 111546 GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGAT 111605 || | ||||| ||||||||||| || ||||||||||| |||| ||||||| | Sbjct 4945 CTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGT 4886 Query 111606 CTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 111665 | | ||| | || || | || || || ||| | || | ||||| | || || Sbjct 4885 CGCGTGCTCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACAT 4826 Query 111666 CCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATCCCTTTCGACGCCCAGCTT 111719 |||| |||||||| ||||| |||| |||| || | ||| | ||| ||| Sbjct 4825 CCGCATGCCATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTA---CCACCTT 4769 Query 111720 GATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATT 111779 ||| ||||| | || || ||| || || |||||||| |||| ||||| | || | Sbjct 4768 GATCGACATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAAT 4709 Query 111780 GACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAA 111839 |||||||| || ||| | | | || | | ||||||| | |||| Sbjct 4708 TTCCATTTGTGCCAGCAATGTATGCACCAGTAGCACGAATTCTGTGGATGTTGAGACCAA 4649 Query 111840 TACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGA 111899 |||| ||||| ||| || || ||||| | | | ||| |||| || || | | Sbjct 4648 TACCTCCAGCATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAA 4589 Query 111900 TTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAG 111959 | |||||||| || | || |||||||| || | || | | ||||||||| | Sbjct 4588 TACTATCCTCCTTCATGTCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGTGTACCCG 4529 Query 111960 CATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTC 112018 | |||||| ||||| | ||||| | || || | | |||||| || ||| || Sbjct 4528 CGGAGAAGAGTGTTGGAGAAGCGTGTGT-AAAGTATTTGTTGGACATTAAGTTGTAGGTT 4470 Query 112019 TCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTAC 112078 || | | | || || || || ||||| || || | || || ||||| | ||| | Sbjct 4469 TCAATGGCGCTCTCGATATCATCACCGTGAATACCAACGGCAACACGCATAATCATTTGT 4410 Query 112079 TGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTT 112137 ||||| ||| | | |||||||| || | || || | || ||||||| || || Sbjct 4409 TGTGGACGTTCAGCAACTTTTCCATCGAGGCGGAGGAGGTATGATC-TCTCAAGAGTCTT 4351 Query 112138 GAGACCAAAGTA 112149 || || ||||| Sbjct 4350 GAATCCGAAGTA 4339 >seq5810 Length=707 Score = 138 bits (152), Expect = 1e-27 Identities = 195/270 (72%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || ||||||| || |||| |||||||||||| |||||| | ||||||| | Sbjct 666 GGGAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCAATG 607 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | ||| || || ||| || |||| ||||| |||||||||||| || Sbjct 606 ATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCCTG 547 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| |||||||||||||||||| |||| | || ||||| ||||| | | |||||| Sbjct 546 TTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGAATG 487 Query 111410 GCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTA 111465 || | ||| | || | | || | |||| || |||| || ||||| |||||| Sbjct 486 GCATACCAGAGTTTCTGAGCCTTG----ATGGTCTTGCGGCCACGGCCCTCTTGCTCGTA 431 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACC 111495 ||| | ||| ||||| || |||||||| || Sbjct 430 CTTGGCGTAAAGGGCATCGAACTCCTCGCC 401 >seq10338 Length=29807 Score = 93.3 bits (102), Expect = 5e-14 Identities = 327/506 (65%), Gaps = 6/506 (1%) Strand=Plus/Minus Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439 || |||||||| |||||||||||||| ||| | || |||||||||||| ||||| ||| Sbjct 13420 ACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGAGAAATGTTTTCCATGAAGTCGAAT 13361 Query 122440 GGATTCTTCG--CGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACA 122497 || || | | || | ||| | |||| || ||||| || | | Sbjct 13360 GGGTTGGTGGAACGGT--AAACCTTTTCATTACCAAGGGCAAGAAGAAGACGGTCTGCGA 13303 Query 122498 CATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTG 122557 | |||||||||| | |||| || |||||||| || | ||| |||||| || | Sbjct 13302 CGAACTCAATGTATTGTTTCATCAGATCCGAGTTCATGCCAAGGAGAGCACATGGAAGAG 13243 Query 122558 CGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTT 122617 | || | ||| | | |||||| ||| |||||| | | || | || | | || Sbjct 13242 CTTCGGTCAAGAATTCCTGCTCAATTGTAACAGCCTCTGTGATGACATCCTGAACGGCTT 13183 Query 122618 CGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGAC 122677 || | || | || ||| | |||||| ||| || || || |||| Sbjct 13182 GTTTACTTGGGCGATGCTTCAAGTGCGAGAAGAGAAGGCAGGCGAAGTCGGTATGAAGAC 13123 Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 |||| || ||||| || || || || ||||| ||||| | ||| | ||| ||||||| Sbjct 13122 CCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTAAGACCGGCCATCAAACCACGCTTCT 13063 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 122797 | | ||| | |||| | |||||| || |||||||||||| || ||| || || | Sbjct 13062 TGAGCCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCTTCAACAGCAGCGAATG 13003 Query 122798 CAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTGCCCATTTC 122856 | | || |||| || || | || ||||| | | | |||| | | ||||| | Sbjct 13002 CGACGAGACGTTGAGCAAATG-TAGATTCTTTGTCTTGGATCCATCTAACAGCCCAATCG 12944 Query 122857 GCCTTCTTCTCAATACATGGTACAGT 122882 |||||||||| |||||| || || || Sbjct 12943 GCCTTCTTCTTAATACAAGGGACTGT 12918 >seq10051 Length=55976 Score = 82.4 bits (90), Expect = 1e-10 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 164658 GGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCAC 164717 || || || || || || |||| ||| ||| ||||||||||| | || ||||| ||| Sbjct 28545 GGAGCCGGAGTAATCGACGCCGATTATCGAGGACAAGTCAAAGTCTTGCTGTTCAACCAC 28604 Query 164718 GGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||| ||||| || || || ||| | || ||||| || || ||| | || | ||| | Sbjct 28605 GGAGAGAAAGATTTCGATGTCAAGGAGGGAGATCGTATTGCGCAATTGGTGTTGGAGAGG 28664 Query 164778 TGTGAAACACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACGGAGAGAGGTGCGGGT 164837 | | ||||| || || |||| | | ||| | ||||||| | | | ||||| || Sbjct 28665 ATTTATACACCTGAGGTTATGGAAGTGGAAGTTTTGGAAGAGAGCGTGCGGGGTGCTGGA 28724 Query 164838 GGATTTGG 164845 || ||||| Sbjct 28725 GGGTTTGG 28732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627939545839200