Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 181 1e-40
seq5810 138 1e-27
seq10338 93.3 5e-14
seq10051 82.4 1e-10
>seq10763
Length=10051
Score = 181 bits (200), Expect = 1e-40
Identities = 1141/1812 (63%), Gaps = 47/1812 (3%)
Strand=Plus/Minus
Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422
|||||||||||||| || |||||||| || ||||||| | | |||||| |||| |
Sbjct 6128 CGGAGATAGTACATTCCAGTCTTGAGACCCAATTTCCATCCAGCGAAATGCATGGAAGTG 6069
Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAG 110482
| |||| ||| || || | |||| | |||||| |||| ||| ||||||||
Sbjct 6068 ATCTTGCCCATTGTAGGGTCCTTCATGTGAATGTTCATCGATTGAGATTGATCAATGAAA 6009
Query 110483 CGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA---ATTTCCCAAACTGTG 110539
|| || | ||| ||||| | || | | ||| | | | ||||||||||| ||
Sbjct 6008 GCACCACGGTCTGCGGCCATTTGAACAATGT--TTCGT-TGAGAGATTTCCCAAACGGTC 5952
Query 110540 CGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCC 110599
|||||| || || || |||| || | | ||||| || |||||||| ||
Sbjct 5951 TTGTAGAGAGCTTTAATCTCGGCTGGAATGTTGGGAATATTTTGAATGGAACCACCA--- 5895
Query 110600 TTCACC-ATGA---GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATT 110655
||| | |||| ||| |||||| | | ||||| || || || | | || ||
Sbjct 5894 -TCAGCGATGATACGATTCTTCATGTTATCAGACCAAAGTCCCATGTCGACCAAATCCTT 5836
Query 110656 GACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTT 110715
| || ||| || | |||||||| || | | | ||| |||||
Sbjct 5835 AAGAAGCCATGGGTTAACGACTTGGAACTCACCGGCCAACACACGGCGTGAGTAAATGTT 5776
Query 110716 TGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 110775
| |||||||| || || |||||||| ||| | ||||| | ||| ||| |||||
Sbjct 5775 GGAAGTGTATGGCTCGAAACATTCATTGAAACCGAGAATTTGAGATGTGCTGGCAGTTGG 5716
Query 110776 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835
||| || || | | | ||| || || | ||| | | |||||| || |||||||
Sbjct 5715 CATAGGAGCAACAAGCAAACTATTCCGGATACCATGTTGCTTGATAGATTGCTTGAGAGA 5656
Query 110836 ATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893
|||||| || | || | | || | || ||||||| ||| | |||||| | ||
Sbjct 5655 ATCCCAATCCCAAA-GATCCGTAGGAGTAACAC-CCCACATATCATATTGAAGCTCACCC 5598
Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCA-CA 110952
| ||| | ||||| || ||| | | || || | ||| | | || | | | ||
Sbjct 5597 TTGGAGACTGGAGATCCTTCATATGACTCGTATGGGCCTAATTCCTTGGCTATCTGAACA 5538
Query 110953 GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGC 111012
| | || | | | |||| || ||||| |||||||| | || | | ||| ||
Sbjct 5537 GATGAAGTCAAAGCAC-CGTGGTAGATGGTCTCAAAGATTTGGATGTTGAGATGCTTCGC 5479
Query 111013 TTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACC 111072
||| |||||| |||| | ||| | || |||| || ||||||||||||||
Sbjct 5478 TTCGGGTGAATCGAATGGTAAACGGAGAGCCAAGAAGGCATCAGCAAGACCTTGAACACC 5419
Query 111073 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATT 111132
| | ||||||||| || || | ||| ||| || || |||||||| ||||
Sbjct 5418 AACAGCAATAGGTCGATGACGGAAATTGCTTCTTCTGGCTTCTTCGACGGGATAGTAATT 5359
Query 111133 TCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192
| || || | ||| | ||| || ||||| | || || ||||| ||||
Sbjct 5358 GATATCGATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCGTGAAGCTTTTG 5299
Query 111193 ATAATCAAAAGTGCGAGTCTCTTC---ATTGACATACTTTGGAAGGGCGATTGATGCCAA 111249
||||| |||| | ||| | |||||| | |||| || || || || |||||
Sbjct 5298 GAAATCATAAGTTC---CCTCGGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGCCAA 5242
Query 111250 ATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGA 111309
||| || ||| |||||| | | ||| || | ||||| || || ||||||||
Sbjct 5241 ATTACAGCAAGCAACCTCATCAGGTGCAGAGTATTCGACGATTTCCGTGCACAAGTTGGA 5182
Query 111310 ACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAG 111369
|| || || || | ||||||||| || ||||| |||||||| ||||| ||||| ||
Sbjct 5181 GCTGCGGATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTAAAG 5122
Query 111370 CATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGG 111428
|||| | || | || ||||| ||||||| | ||| |||| | ||||| | | | |
Sbjct 5121 CATGAAAGGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTGAGC 5062
Query 111429 CTGGTACAATGGCGTT--GGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAA 111485
|| | || | || |||| | || | |||||| || || |||||||
Sbjct 5061 CTTG----ATAGTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCTTCAA 5006
Query 111486 ACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 111545
|||| ||||| | || | | || || | || || || | || | ||| |
Sbjct 5005 ACTCATCACCATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAAT 4946
Query 111546 GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGAT 111605
|| | ||||| ||||||||||| || ||||||||||| |||| ||||||| |
Sbjct 4945 CTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGT 4886
Query 111606 CTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 111665
| | ||| | || || | || || || ||| | || | ||||| | || ||
Sbjct 4885 CGCGTGCTCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACAT 4826
Query 111666 CCGCGTGCCATGGCTCAAGATAGACTGCGA------TAGATCCCTTTCGACGCCCAGCTT 111719
|||| |||||||| ||||| |||| |||| || | ||| | ||| |||
Sbjct 4825 CCGCATGCCATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTA---CCACCTT 4769
Query 111720 GATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATT 111779
||| ||||| | || || ||| || || |||||||| |||| ||||| | || |
Sbjct 4768 GATCGACATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAAT 4709
Query 111780 GACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAA 111839
|||||||| || ||| | | | || | | ||||||| | ||||
Sbjct 4708 TTCCATTTGTGCCAGCAATGTATGCACCAGTAGCACGAATTCTGTGGATGTTGAGACCAA 4649
Query 111840 TACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGA 111899
|||| ||||| ||| || || ||||| | | | ||| |||| || || | |
Sbjct 4648 TACCTCCAGCATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAA 4589
Query 111900 TTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAG 111959
| |||||||| || | || |||||||| || | || | | ||||||||| |
Sbjct 4588 TACTATCCTCCTTCATGTCAATGAGGAAGCATGAAGAAAGTTGGGCTTGTGGTGTACCCG 4529
Query 111960 CATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTC 112018
| |||||| ||||| | ||||| | || || | | |||||| || ||| ||
Sbjct 4528 CGGAGAAGAGTGTTGGAGAAGCGTGTGT-AAAGTATTTGTTGGACATTAAGTTGTAGGTT 4470
Query 112019 TCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTAC 112078
|| | | | || || || || ||||| || || | || || ||||| | ||| |
Sbjct 4469 TCAATGGCGCTCTCGATATCATCACCGTGAATACCAACGGCAACACGCATAATCATTTGT 4410
Query 112079 TGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTT 112137
||||| ||| | | |||||||| || | || || | || ||||||| || ||
Sbjct 4409 TGTGGACGTTCAGCAACTTTTCCATCGAGGCGGAGGAGGTATGATC-TCTCAAGAGTCTT 4351
Query 112138 GAGACCAAAGTA 112149
|| || |||||
Sbjct 4350 GAATCCGAAGTA 4339
>seq5810
Length=707
Score = 138 bits (152), Expect = 1e-27
Identities = 195/270 (72%), Gaps = 8/270 (3%)
Strand=Plus/Minus
Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289
|| ||||||| || |||| |||||||||||| |||||| | ||||||| |
Sbjct 666 GGGAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCAATG 607
Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349
|| || || || | ||| || || ||| || |||| ||||| |||||||||||| ||
Sbjct 606 ATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCCTG 547
Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409
||||| |||||||||||||||||| |||| | || ||||| ||||| | | ||||||
Sbjct 546 TTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGAATG 487
Query 111410 GCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTT--GGCC-CGTCCCTCCGCCTCGTA 111465
|| | ||| | || | | || | |||| || |||| || ||||| ||||||
Sbjct 486 GCATACCAGAGTTTCTGAGCCTTG----ATGGTCTTGCGGCCACGGCCCTCTTGCTCGTA 431
Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACC 111495
||| | ||| ||||| || |||||||| ||
Sbjct 430 CTTGGCGTAAAGGGCATCGAACTCCTCGCC 401
>seq10338
Length=29807
Score = 93.3 bits (102), Expect = 5e-14
Identities = 327/506 (65%), Gaps = 6/506 (1%)
Strand=Plus/Minus
Query 122380 ACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 122439
|| |||||||| |||||||||||||| ||| | || |||||||||||| ||||| |||
Sbjct 13420 ACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGAGAAATGTTTTCCATGAAGTCGAAT 13361
Query 122440 GGATTCTTCG--CGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGATCCGACA 122497
|| || | | || | ||| | |||| || ||||| || | |
Sbjct 13360 GGGTTGGTGGAACGGT--AAACCTTTTCATTACCAAGGGCAAGAAGAAGACGGTCTGCGA 13303
Query 122498 CATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGTG 122557
| |||||||||| | |||| || |||||||| || | ||| |||||| || |
Sbjct 13302 CGAACTCAATGTATTGTTTCATCAGATCCGAGTTCATGCCAAGGAGAGCACATGGAAGAG 13243
Query 122558 CGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTT 122617
| || | ||| | | |||||| ||| |||||| | | || | || | | ||
Sbjct 13242 CTTCGGTCAAGAATTCCTGCTCAATTGTAACAGCCTCTGTGATGACATCCTGAACGGCTT 13183
Query 122618 CGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCTGGTGGAGAC 122677
|| | || | || ||| | |||||| ||| || || || ||||
Sbjct 13182 GTTTACTTGGGCGATGCTTCAAGTGCGAGAAGAGAAGGCAGGCGAAGTCGGTATGAAGAC 13123
Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737
|||| || ||||| || || || || ||||| ||||| | ||| | ||| |||||||
Sbjct 13122 CCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTAAGACCGGCCATCAAACCACGCTTCT 13063
Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 122797
| | ||| | |||| | |||||| || |||||||||||| || ||| || || |
Sbjct 13062 TGAGCCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCTTCAACAGCAGCGAATG 13003
Query 122798 CAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTGCCCATTTC 122856
| | || |||| || || | || ||||| | | | |||| | | ||||| |
Sbjct 13002 CGACGAGACGTTGAGCAAATG-TAGATTCTTTGTCTTGGATCCATCTAACAGCCCAATCG 12944
Query 122857 GCCTTCTTCTCAATACATGGTACAGT 122882
|||||||||| |||||| || || ||
Sbjct 12943 GCCTTCTTCTTAATACAAGGGACTGT 12918
>seq10051
Length=55976
Score = 82.4 bits (90), Expect = 1e-10
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 164658 GGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCAC 164717
|| || || || || || |||| ||| ||| ||||||||||| | || ||||| |||
Sbjct 28545 GGAGCCGGAGTAATCGACGCCGATTATCGAGGACAAGTCAAAGTCTTGCTGTTCAACCAC 28604
Query 164718 GGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777
||||| ||||| || || || ||| | || ||||| || || ||| | || | ||| |
Sbjct 28605 GGAGAGAAAGATTTCGATGTCAAGGAGGGAGATCGTATTGCGCAATTGGTGTTGGAGAGG 28664
Query 164778 TGTGAAACACCCGATGTGGAGGAAATTGGTGTTCTTGAAGAGACGGAGAGAGGTGCGGGT 164837
| | ||||| || || |||| | | ||| | ||||||| | | | ||||| ||
Sbjct 28665 ATTTATACACCTGAGGTTATGGAAGTGGAAGTTTTGGAAGAGAGCGTGCGGGGTGCTGGA 28724
Query 164838 GGATTTGG 164845
|| |||||
Sbjct 28725 GGGTTTGG 28732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627939545839200
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