Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 230 3e-55
seq5810 114 2e-20
seq10338 102 1e-16
>seq10763
Length=10051
Score = 230 bits (254), Expect = 3e-55
Identities = 1114/1746 (64%), Gaps = 47/1746 (3%)
Strand=Plus/Minus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
||||| |||||||| || |||||||| ||| ||||| || | |||||| || |
Sbjct 6128 CGGAGATAGTACATTCCAGTCTTGAGACCCAATTTCCATCCAGCGAAATGCATGGAAGTG 6069
Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956
| |||| | || || | |||| | |||||| ||| |||||||| |||||
Sbjct 6068 ATCTTGCCCATTGTAGGGTCCTTCATGTGAATGTTCATCGATTGAGATTGATCAATGAAA 6009
Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTCC 118014
|| || || || ||||| | || || || ||| | || ||||||| || |||
Sbjct 6008 GCACCACGGTCTGCGGCCATTTGAA-CA-ATGTTTCGTTGAGAGATTTCCCAAACGGTCT 5951
Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074
||||||| ||||| || |||| || | |||||||| ||||| ||||| |
Sbjct 5950 TGTAGAGAGCTTTAATCTCGGCTGGAATGTTGGGAATATTTTGAATGGAACCACCATCAG 5891
Query 118075 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134
|| || ||| |||||| | | ||||| || || || | | ||||| | |
Sbjct 5890 CGATGATACGATTCTTCATGTTATCAGACCAAAGTCCCATGTCGACCAAATCCTTAAGAA 5831
Query 118135 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAGATAGATATTGG 118191
| ||| | | || || |||||||| || | || | | || || || ||||
Sbjct 5830 GCCATGGGT--TAACGACTTGGAACTCACCGGCCAACACACGGCGTGAG-TAAATGTTGG 5774
Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251
||||||||||| || || |||||| ||| | ||||| | |||| ||| || ||||
Sbjct 5773 AAGTGTATGGCTCGAAACATTCATTGAAACCGAGAATTTGAGATGTGCTGGCAGTTGGCA 5714
Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGT 118311
| || || | || | || || |||| ||| | || | | || || |||||||| |
Sbjct 5713 TAGGAGCAACAAGCAAACTATTCCGGATACCATGTTGCTTGATAGATTGCTTGAGAGAAT 5654
Query 118312 CCCAGTCGTAGTTGAGCTTT----GTCTCCCCCTGCCACATATCAAACTGGAGGATACCT 118367
|||| || | || | | || | ||| ||||||||| | || || |||
Sbjct 5653 CCCAATCCCAAA-GATCCGTAGGAGTAACACCC---CACATATCATATTGAAGCTCACCC 5598
Query 118368 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 118427
| ||| |||| ||||| ||| ||| ||| |||||||| ||| || | || ||
Sbjct 5597 TTGGAGACTGGAGATCCTTCATATGACTCGTATGGGCCTAATTCCTTGGCTA--TCTGAA 5540
Query 118428 C---TCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTG 118484
| | || | | | |||| || || || ||||| || | || | |||
Sbjct 5539 CAGATGAAGTCAAAG-CACCGTGGTAGATGGTCTCAAAGATTTGGATGTTGAGATGCTTC 5481
Query 118485 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544
|| ||| ||||| || | | ||| | || |||| || |||||||| |||
Sbjct 5480 GCTTCGGGTGAATCGAATGGTAAACGGAGAGCCAAGAAGGCATCAGCAAGACCTTGAACA 5421
Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTCCGAGCGGTCTCCACGGGATAAAA 118603
|| | |||| || ||||| | | ||| |||| | || || |||||||| |
Sbjct 5420 CCAACAGCAATAGGTCGATGACGGAAATTGCTTCTTCTG-GCTTCTTCGACGGGATAGTA 5362
Query 118604 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 118663
||| ||||||||| | | || | ||| || ||||| | || || ||||||||
Sbjct 5361 ATTGATATCGATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCGTGAAGCTT 5302
Query 118664 TTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGC 118720
|| | ||||| || | | ||| | |||||| | | || || || || || ||
Sbjct 5301 TTGGAAATCATAAGTTCC---CTCGGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGC 5245
Query 118721 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT 118780
|| |||||| || |||||| ||| ||| || | |||||||||||||||||
Sbjct 5244 CAAATTACAGCAAGCAACCTCATCAGGTGCAGAGTATTCGACGATTTCCGTGCACAAGTT 5185
Query 118781 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 118840
|| || || ||||| | ||||||||||| |||| |||| || ||||| |||||
Sbjct 5184 GGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTA 5125
Query 118841 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGC 118900
||||||| | || | || ||||| || || | || ||| |||| | ||| | |
Sbjct 5124 AAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTG 5065
Query 118901 AGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAA 118960
||| | ||| | || || | || |||||| || || ||||||||
Sbjct 5064 AGCCTTGATAGTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCTTCAAA 5005
Query 118961 CTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTG 119020
||| ||||| | | || | | || || | | ||||| | ||| | ||| |
Sbjct 5004 CTCATCACCATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATC 4945
Query 119021 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 119080
|| || ||||| |||||||||||||| ||||| |||||||| || | ||||| ||
Sbjct 4944 TCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTC 4885
Query 119081 CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 119140
|| ||| |||| || | || ||||| || | |||||||| || | || |||
Sbjct 4884 GCGTGCTCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATC 4825
Query 119141 CGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTG 119194
||| ||||| ||||| ||||| | |||| || || | | || |||| | ||
Sbjct 4824 CGCATGCCATGGTTCAAGGTAGATGGCGAATGCACC---AGGGCGCTTGTTACCACCTTG 4768
Query 119195 GTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTG 119254
| ||||| || || || ||| || || |||||||| |||| |||||| | || |
Sbjct 4767 ATCGACATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATT 4708
Query 119255 GCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATC-GTGGATGTGCATACCAA 119313
|||||||| || ||| | | | || | || || |||||||| | |||||
Sbjct 4707 TCCATTTGTGCCAGCAATGTATGCACCAGTAGCAC-GAATTCTGTGGATGTTGAGACCAA 4649
Query 119314 TACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGA 119373
|||| || || ||| || || || || | | | | | | || || ||||| |
Sbjct 4648 TACCTCCAGCATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAA 4589
Query 119374 TCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCA 119432
| || |||| | | ||||||||||| || | ||| ||| || ||||||||
Sbjct 4588 TACTATCCTCCTTCATGTCAATGAGGAAGCATGAAGAAAGTTG-GGCTTGTGGTGTACCC 4530
Query 119433 GCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGT 119491
||| |||||| ||||| | ||||| | || || | | |||||| || ||||||
Sbjct 4529 GCGGAGAAGAGTGTTGGAGAAGCGTGTGT-AAAGTATTTGTTGGACATTAAGTTGTAGGT 4471
Query 119492 CTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTA 119551
|| | | || || || || ||||||||||| | | || ||||||| ||| |
Sbjct 4470 TTCAATGGCGCTCTCGATATCATCACCGTGAATACCAACGGCAACACGCATAATCATTTG 4411
Query 119552 TTGGGG 119557
||| ||
Sbjct 4410 TTGTGG 4405
>seq5810
Length=707
Score = 114 bits (126), Expect = 2e-20
Identities = 185/266 (70%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763
|| ||||||| || ||||| || || |||| |||||| || ||||||| ||
Sbjct 666 GGGAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCAATG 607
Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823
|| || ||||||| ||| || || ||| || |||| |||||| || || ||| ||
Sbjct 606 ATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCCTG 547
Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883
|| || ||||||||||| |||||| | || | || ||||| || |||| || ||||||
Sbjct 546 TTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGAATG 487
Query 118884 GCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTT 118943
|| | ||||| | ||| | || | | | || ||||||| |||||||||
Sbjct 486 GCATACCAGAGTTTCTGAGCCTTGATGGTCTTGCGGCCACGGCCCTCTTGCTCGTACTTG 427
Query 118944 GTGTAGAGGGCTTCAAACTCTTCACC 118969
| ||| ||||| || ||||| || ||
Sbjct 426 GCGTAAAGGGCATCGAACTCCTCGCC 401
>seq10338
Length=29807
Score = 102 bits (112), Expect = 1e-16
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087
|| ||||||||||||||||||||||| || || ||||| ||||| | ||| | |||
Sbjct 13129 TGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTAAGACCGGCCATCAAACCA 13070
Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147
|||||||| | |||||| || | ||||| ||| ||||||||| || || |||
Sbjct 13069 CGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCTTCAACAGCA 13010
Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATCGC 130206
||||| || | |||||| | |||||| | | |||||| | | ||| | | ||
Sbjct 13009 GCGAATGCGACGAGACGTTGAGCAAATG-TAGATTCTTTGTCTTGGATCCATCTAACAGC 12951
Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239
||| | ||||| |||| ||||| ||||| ||
Sbjct 12950 CCAATCGGCCTTCTTCTTAATACAAGGGACTGT 12918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618344158608120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |