Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq10763 230 3e-55 seq5810 114 2e-20 seq10338 102 1e-16 >seq10763 Length=10051 Score = 230 bits (254), Expect = 3e-55 Identities = 1114/1746 (64%), Gaps = 47/1746 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 ||||| |||||||| || |||||||| ||| ||||| || | |||||| || | Sbjct 6128 CGGAGATAGTACATTCCAGTCTTGAGACCCAATTTCCATCCAGCGAAATGCATGGAAGTG 6069 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | || || | |||| | |||||| ||| |||||||| ||||| Sbjct 6068 ATCTTGCCCATTGTAGGGTCCTTCATGTGAATGTTCATCGATTGAGATTGATCAATGAAA 6009 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTCC 118014 || || || || ||||| | || || || ||| | || ||||||| || ||| Sbjct 6008 GCACCACGGTCTGCGGCCATTTGAA-CA-ATGTTTCGTTGAGAGATTTCCCAAACGGTCT 5951 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074 ||||||| ||||| || |||| || | |||||||| ||||| ||||| | Sbjct 5950 TGTAGAGAGCTTTAATCTCGGCTGGAATGTTGGGAATATTTTGAATGGAACCACCATCAG 5891 Query 118075 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134 || || ||| |||||| | | ||||| || || || | | ||||| | | Sbjct 5890 CGATGATACGATTCTTCATGTTATCAGACCAAAGTCCCATGTCGACCAAATCCTTAAGAA 5831 Query 118135 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC-TCAGATAGATATTGG 118191 | ||| | | || || |||||||| || | || | | || || || |||| Sbjct 5830 GCCATGGGT--TAACGACTTGGAACTCACCGGCCAACACACGGCGTGAG-TAAATGTTGG 5774 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251 ||||||||||| || || |||||| ||| | ||||| | |||| ||| || |||| Sbjct 5773 AAGTGTATGGCTCGAAACATTCATTGAAACCGAGAATTTGAGATGTGCTGGCAGTTGGCA 5714 Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGT 118311 | || || | || | || || |||| ||| | || | | || || |||||||| | Sbjct 5713 TAGGAGCAACAAGCAAACTATTCCGGATACCATGTTGCTTGATAGATTGCTTGAGAGAAT 5654 Query 118312 CCCAGTCGTAGTTGAGCTTT----GTCTCCCCCTGCCACATATCAAACTGGAGGATACCT 118367 |||| || | || | | || | ||| ||||||||| | || || ||| Sbjct 5653 CCCAATCCCAAA-GATCCGTAGGAGTAACACCC---CACATATCATATTGAAGCTCACCC 5598 Query 118368 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 118427 | ||| |||| ||||| ||| ||| ||| |||||||| ||| || | || || Sbjct 5597 TTGGAGACTGGAGATCCTTCATATGACTCGTATGGGCCTAATTCCTTGGCTA--TCTGAA 5540 Query 118428 C---TCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTG 118484 | | || | | | |||| || || || ||||| || | || | ||| Sbjct 5539 CAGATGAAGTCAAAG-CACCGTGGTAGATGGTCTCAAAGATTTGGATGTTGAGATGCTTC 5481 Query 118485 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544 || ||| ||||| || | | ||| | || |||| || |||||||| ||| Sbjct 5480 GCTTCGGGTGAATCGAATGGTAAACGGAGAGCCAAGAAGGCATCAGCAAGACCTTGAACA 5421 Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTCCGAGCGGTCTCCACGGGATAAAA 118603 || | |||| || ||||| | | ||| |||| | || || |||||||| | Sbjct 5420 CCAACAGCAATAGGTCGATGACGGAAATTGCTTCTTCTG-GCTTCTTCGACGGGATAGTA 5362 Query 118604 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 118663 ||| ||||||||| | | || | ||| || ||||| | || || |||||||| Sbjct 5361 ATTGATATCGATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCGTGAAGCTT 5302 Query 118664 TTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGC 118720 || | ||||| || | | ||| | |||||| | | || || || || || || Sbjct 5301 TTGGAAATCATAAGTTCC---CTCGGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGC 5245 Query 118721 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT 118780 || |||||| || |||||| ||| ||| || | ||||||||||||||||| Sbjct 5244 CAAATTACAGCAAGCAACCTCATCAGGTGCAGAGTATTCGACGATTTCCGTGCACAAGTT 5185 Query 118781 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 118840 || || || ||||| | ||||||||||| |||| |||| || ||||| ||||| Sbjct 5184 GGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGCTCTTTTTGTTGCAAGCATCTTTGTA 5125 Query 118841 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGC 118900 ||||||| | || | || ||||| || || | || ||| |||| | ||| | | Sbjct 5124 AAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTG 5065 Query 118901 AGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAA 118960 ||| | ||| | || || | || |||||| || || |||||||| Sbjct 5064 AGCCTTGATAGTCTTACGGCCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCTTCAAA 5005 Query 118961 CTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTG 119020 ||| ||||| | | || | | || || | | ||||| | ||| | ||| | Sbjct 5004 CTCATCACCATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATC 4945 Query 119021 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 119080 || || ||||| |||||||||||||| ||||| |||||||| || | ||||| || Sbjct 4944 TCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTC 4885 Query 119081 CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATC 119140 || ||| |||| || | || ||||| || | |||||||| || | || ||| Sbjct 4884 GCGTGCTCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATC 4825 Query 119141 CGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTG 119194 ||| ||||| ||||| ||||| | |||| || || | | || |||| | || Sbjct 4824 CGCATGCCATGGTTCAAGGTAGATGGCGAATGCACC---AGGGCGCTTGTTACCACCTTG 4768 Query 119195 GTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTG 119254 | ||||| || || || ||| || || |||||||| |||| |||||| | || | Sbjct 4767 ATCGACATATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAATT 4708 Query 119255 GCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATC-GTGGATGTGCATACCAA 119313 |||||||| || ||| | | | || | || || |||||||| | ||||| Sbjct 4707 TCCATTTGTGCCAGCAATGTATGCACCAGTAGCAC-GAATTCTGTGGATGTTGAGACCAA 4649 Query 119314 TACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGA 119373 |||| || || ||| || || || || | | | | | | || || ||||| | Sbjct 4648 TACCTCCAGCATTCTTAGAAATCATGGCACAAATCTTCAAAGTATCATAAATTCCATCAA 4589 Query 119374 TCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCA 119432 | || |||| | | ||||||||||| || | ||| ||| || |||||||| Sbjct 4588 TACTATCCTCCTTCATGTCAATGAGGAAGCATGAAGAAAGTTG-GGCTTGTGGTGTACCC 4530 Query 119433 GCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGT 119491 ||| |||||| ||||| | ||||| | || || | | |||||| || |||||| Sbjct 4529 GCGGAGAAGAGTGTTGGAGAAGCGTGTGT-AAAGTATTTGTTGGACATTAAGTTGTAGGT 4471 Query 119492 CTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTA 119551 || | | || || || || ||||||||||| | | || ||||||| ||| | Sbjct 4470 TTCAATGGCGCTCTCGATATCATCACCGTGAATACCAACGGCAACACGCATAATCATTTG 4411 Query 119552 TTGGGG 119557 ||| || Sbjct 4410 TTGTGG 4405 >seq5810 Length=707 Score = 114 bits (126), Expect = 2e-20 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 || ||||||| || ||||| || || |||| |||||| || ||||||| || Sbjct 666 GGGAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCAATG 607 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||||| ||| || || ||| || |||| |||||| || || ||| || Sbjct 606 ATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCCTG 547 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || ||||||||||| |||||| | || | || ||||| || |||| || |||||| Sbjct 546 TTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGAATG 487 Query 118884 GCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTT 118943 || | ||||| | ||| | || | | | || ||||||| ||||||||| Sbjct 486 GCATACCAGAGTTTCTGAGCCTTGATGGTCTTGCGGCCACGGCCCTCTTGCTCGTACTTG 427 Query 118944 GTGTAGAGGGCTTCAAACTCTTCACC 118969 | ||| ||||| || ||||| || || Sbjct 426 GCGTAAAGGGCATCGAACTCCTCGCC 401 >seq10338 Length=29807 Score = 102 bits (112), Expect = 1e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || ||||||||||||||||||||||| || || ||||| ||||| | ||| | ||| Sbjct 13129 TGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAGAAAGTAAGACCGGCCATCAAACCA 13070 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 |||||||| | |||||| || | ||||| ||| ||||||||| || || ||| Sbjct 13069 CGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCACTGAAGAAGATACCTTCAACAGCA 13010 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATCGC 130206 ||||| || | |||||| | |||||| | | |||||| | | ||| | | || Sbjct 13009 GCGAATGCGACGAGACGTTGAGCAAATG-TAGATTCTTTGTCTTGGATCCATCTAACAGC 12951 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239 ||| | ||||| |||| ||||| ||||| || Sbjct 12950 CCAATCGGCCTTCTTCTTAATACAAGGGACTGT 12918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618344158608120