Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq10763 291 9e-74 seq10338 143 3e-29 seq5810 104 3e-17 seq10051 82.4 9e-11 >seq10763 Length=10051 Score = 291 bits (322), Expect = 9e-74 Identities = 1158/1797 (64%), Gaps = 59/1797 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| | ||||| || ||| | |||||||| || || || || || | | Sbjct 4405 CCACAACAAATGATTATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGAGAGCGCC 4464 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | || || ||| || |||||| | | || || | ||||| | ||||| ||||| Sbjct 4465 ATTGAAACCTACAACTTAATGTCCAACAAATACTTT-ACACACGCTTCTCCAACACTCTT 4523 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 | || ||||||||| | ||||| | || |||||||| || | || |||||||| Sbjct 4524 CTCCGCGGGTACACCACAAGCCCAACTTTCTTCATGCTTCCTCATTGACATGAAGGAGGA 4583 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || | || || |||| ||| | | | ||||| || || ||| ||||| Sbjct 4584 TAGTATTGATGGAATTTATGATACTTTGAAGATTTGTGCCATGATTTCTAAGAATGCTGG 4643 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 |||||||| | ||||||| | | || | | | ||| || ||||| Sbjct 4644 AGGTATTGGTCTCAACATCCACAGAATTCGTGCTACTGGTGCATACATTGCTGGCACAAA 4703 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| | || | ||||| |||| |||||||| || || ||| || || | ||||| Sbjct 4704 TGGAAATTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAATACCGCTAGATATGT 4763 Query 104581 AAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCA 104634 |||||| ||| | ||| | || |||| |||| ||||| |||||||| Sbjct 4764 CGATCAAGGTGG---TAACAAGCGCCCTGGTGCATTCGCCATCTACCTTGAACCATGGCA 4820 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 |||||| || | ||||| | || | || || || || | ||||| | || Sbjct 4821 TGCGGATGTCTTTGAGTTTTTGGATCTCCGAAAGAATCATGGAAAGGAGGAAGTTCGAGC 4880 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||||| ||||| | || ||||||||||||||||||||||||||| | ||||| ||| Sbjct 4881 ACGCGACCTCTTTTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAA 4940 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 || ||||| | ||| | || || || | ||||| | | |||| | ||||| Sbjct 4941 CGGAGATTGGACACTCATGTGCCCCAACGAATGTCCTGGCTTGGCTGATGTCTATGGTGA 5000 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACGGTG 104872 ||||||||||| ||||| |||||| || ||||| || || | ||| | Sbjct 5001 TGAGTTTGAAGCTCTTTATGAGGGTTACGAGAAACAAGGTAAAGGCCG--TAAGACTATC 5058 Query 104873 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 ||| | | ||| | |||| ||| || | || || ||||| || | || | | Sbjct 5059 AAGGCTCAAAAGCTTTGGTATTCTATCCTCGAGGCACAGACTGAGACAGGAAACCCTTTC 5118 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 |||||||||||||| || || ||| ||||||| |||||||||||| | || ||| Sbjct 5119 ATGCTTTACAAAGATGCTTGCAACAAAAAGAGCAATCAAAAGAATCTCGGCACAATCCGC 5178 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 || ||||| | || || |||||| | |||| | | |||||| ||| ||| Sbjct 5179 AGCTCCAACTTGTGCACGGAAATCGTCGAATACTCTGCACCTGATGAGGTTGCTTGCTGT 5238 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTTGATT 105110 || | || || || |||||||| | | ||| | || | | | | || | ||||| Sbjct 5239 AATTTGGCTTCTATTGCTCTCCCAACCTTTGTCAA--CATGGCCGAGGGAACTTATGATT 5296 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 |||| || ||||| || || ||| || |||| | |||| |||| |||| Sbjct 5297 TCCAAAAGCTTCACGAGGTCGTTCAAGTTGTTGTCAGAAACTTGAACAAGATTATCGATA 5356 Query 105171 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 105230 |||| || ||||| || || | | | ||| | | || || || |||| | Sbjct 5357 TCAATTACTATCCCGTCGAAGAAGCCAGAAGAAGCAATTTCCGTCATCGACCTATTGCTG 5416 Query 105231 TCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG-TCGCC----ACGCATTTGATTC 105285 | |||||||| ||||| || |||| | ||||| | || || || |||| ||||| Sbjct 5417 TTGGTGTTCAAGGTCTTGCTGATG----CCTTCTTGGCTCTCCGTTTAC-CATTCGATTC 5471 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 |||||||||| | |||| | || ||||||||||| || |||| ||| |||| Sbjct 5472 ACCCGAAGCGAAGCATCTCAACATCCAAATCTTTGAGACCATCTACCACGGTGCT-TTGA 5530 Query 105346 GGCGA---GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 | ||||||| | || ||| || ||||| || | | ||| || ||||| Sbjct 5531 CTTCATCTGTTCAGA--TAGCCAAGGAATTAGGCCCATACGAGTCATATGAAGGATCTCC 5588 Query 105403 AGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 105461 || || |||||| | |||||||| ||||||||||| | | | | | || | | Sbjct 5589 AGTCTC-CAAGGGTGAGCTTCAATATGATATGTGGGGTGTTACTCCTACGGATCTTTGGG 5647 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | ||||| |||||||| || |||||| | | ||| | || || ||| | || | | Sbjct 5648 ATTGGGATTCTCTCAAGCAATCTATCAAGCAACATGGTATCCGGAATAGTTTGCTTGTTG 5707 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| |||||||| ||| ||| | ||||| | ||| |||||||| || || || | Sbjct 5708 CTCCTATGCCAACTGCCAGCACATCTCAAATTCTCGGTTTCAATGAATGTTTCGAGCCAT 5767 Query 105582 ACACGACGAACATCTATCTGA-GAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC--- 105637 |||| | ||||| || || | | | | || || ||||| | || ||| Sbjct 5768 ACACTTCCAACATTTA-CTCACGCCGTGTGTTGGCCGGTGAGTTCCAAGTCGTTAACCCA 5826 Query 105638 AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC-- 105695 || ||| |||| || || || || || ||||| | | |||||| ||| Sbjct 5827 TGGCTTCTTAAGGATTTGGTC---GACATGGGACTTTGGTCTGATAACATGAAGAATCGT 5883 Query 105696 -TCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAA 105753 |||| | ||| ||||||||||||||||||||| | |||||| || ||||| Sbjct 5884 ATCATCGCTGA----TGGTGGTTCCATTCAAAATATTCCCAACATTCCAGCCGAGATTAA 5939 Query 105754 GAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTG---ACATGGCCGC 105810 | ||| || |||||||||||| | || || ||||| | |||||||| Sbjct 5940 AGCTCTCTACAAGACCGTTTGGGAAATC--TCTCAACGA-AACATTGTTCAAATGGCCGC 5996 Query 105811 AGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAAC 105870 ||| |||||| |||||||||||| |||| ||||| | |||| | || || Sbjct 5997 AGACCGTGGTGCTTTCATTGATCAATCTCAATCGATGAACATTCACATGAAGGACCCTAC 6056 Query 105871 GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGAT 105930 ||| |||| || |||| ||||| | | ||||| ||||||||| || || || Sbjct 6057 AATGGGCAAGATCACTTCCATGCATTTCGCTGGATGGAAATTGGGTCTCAAGACTGGAAT 6116 Query 105931 GTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGAACCAGA 105987 ||| || ||||| ||| ||| || |||||||| |||| | | || | ||| Sbjct 6117 GTACTATCTCCGTACTATGGCTGCTTCGGCACCAATTCAATTCACTGTCGATCAAGA 6173 >seq10338 Length=29807 Score = 143 bits (158), Expect = 3e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 94790 ||||| || |||||| | ||||| || ||||||||| | | ||| | | |||||| Sbjct 12918 ACAGTCCCTTGTATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCAAGACAAAGAA 12977 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | | | |||||| | || ||| ||||||| || |||||| |||||||||||| ||| Sbjct 12978 TC-TACATTTGCTCAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGG 13036 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||| ||| | |||| | |||||||||||||| ||| | ||| | ||||| ||||| Sbjct 13037 TTCATTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTC 13096 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943 ||||||||| ||||| ||||||||||| || || Sbjct 13097 CAACGAGCTCATCTCCCGTGACGAGGGTCTTCA 13129 >seq5810 Length=707 Score = 104 bits (114), Expect = 3e-17 Identities = 186/269 (69%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGAC 104868 || |||||||| || ||||||||| | ||||||||| |||| || || ||| | ||| Sbjct 401 GGCGAGGAGTTCGATGCCCTTTACGCCAAGTACGAGCAAGAGGGCCGTGGCCGCAA-GAC 459 Query 104869 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | ||| | | ||| | || |||||| || | || ||||||||||||| || Sbjct 460 CATCAAGGCTCAGAAACTCTGGTATGCCATTCTCGAGGCCCAGACCGAGACTGGTAACCC 519 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||||| ||||| || ||||| ||| |||||||| || ||||| ||||| || Sbjct 520 CTTCATGCTCTACAAGGATGCCTGCAACAGGAAGAGTAACCAGAAGAACCTGGGTACTAT 579 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 || || || || || || || ||| | || | | | | |||||| |||||| Sbjct 580 TCGCAGCTCTAACCTGTGCACTGAGATCATTGAGTACAGTGCCCCTGATGAGGTGGCTGT 639 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCA 105077 || ||||| || || |||| ||||||| Sbjct 640 TTGCAACCTGGCTTCCCTCGCCCTCCCCA 668 >seq10051 Length=55976 Score = 82.4 bits (90), Expect = 9e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 154194 AAGTCAAAGTCGTTCTTTTCAATCACGGAGACAAAGACTTTGAGGTAAAGAGGGGTGAGC 154253 ||||||||||| | || ||||| |||||||| ||||| || || || ||| ||| || | Sbjct 28579 AAGTCAAAGTCTTGCTGTTCAACCACGGAGAGAAAGATTTCGATGTCAAGGAGGGAGATC 28638 Query 154254 GCATCGCACAACTTGTTCTTGAGAGGTGTGAGACACCCGATGTGGAGGAAATTGGCTTCC 154313 | || || ||| | || | |||||| | | ||||| || || |||| | | | Sbjct 28639 GTATTGCGCAATTGGTGTTGGAGAGGATTTATACACCTGAGGTTATGGAAGTGGAAGTTT 28698 Query 154314 TTGAAGAGACGGAGAGGGGTGCAGGCGGATTTGGTTCTACCGG 154356 | ||||||| | | ||||||| || || |||||| |||||| Sbjct 28699 TGGAAGAGAGCGTGCGGGGTGCTGGAGGGTTTGGTAGTACCGG 28741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583174936719480