Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 291 9e-74
seq10338 143 3e-29
seq5810 104 3e-17
seq10051 82.4 9e-11
>seq10763
Length=10051
Score = 291 bits (322), Expect = 9e-74
Identities = 1158/1797 (64%), Gaps = 59/1797 (3%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
||||| | ||| | ||||| || ||| | |||||||| || || || || || | |
Sbjct 4405 CCACAACAAATGATTATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGAGAGCGCC 4464
Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
| || || ||| || |||||| | | || || | ||||| | ||||| |||||
Sbjct 4465 ATTGAAACCTACAACTTAATGTCCAACAAATACTTT-ACACACGCTTCTCCAACACTCTT 4523
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
| || ||||||||| | ||||| | || |||||||| || | || ||||||||
Sbjct 4524 CTCCGCGGGTACACCACAAGCCCAACTTTCTTCATGCTTCCTCATTGACATGAAGGAGGA 4583
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
|| | || || |||| ||| | | | ||||| || || ||| |||||
Sbjct 4584 TAGTATTGATGGAATTTATGATACTTTGAAGATTTGTGCCATGATTTCTAAGAATGCTGG 4643
Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520
|||||||| | ||||||| | | || | | | ||| || |||||
Sbjct 4644 AGGTATTGGTCTCAACATCCACAGAATTCGTGCTACTGGTGCATACATTGCTGGCACAAA 4703
Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580
||| | || | ||||| |||| |||||||| || || ||| || || | |||||
Sbjct 4704 TGGAAATTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAATACCGCTAGATATGT 4763
Query 104581 AAATCAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCA 104634
|||||| ||| | ||| | || |||| |||| ||||| ||||||||
Sbjct 4764 CGATCAAGGTGG---TAACAAGCGCCCTGGTGCATTCGCCATCTACCTTGAACCATGGCA 4820
Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694
|||||| || | ||||| | || | || || || || | ||||| | ||
Sbjct 4821 TGCGGATGTCTTTGAGTTTTTGGATCTCCGAAAGAATCATGGAAAGGAGGAAGTTCGAGC 4880
Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754
||||| ||||| | || ||||||||||||||||||||||||||| | ||||| |||
Sbjct 4881 ACGCGACCTCTTTTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAA 4940
Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814
|| ||||| | ||| | || || || | ||||| | | |||| | |||||
Sbjct 4941 CGGAGATTGGACACTCATGTGCCCCAACGAATGTCCTGGCTTGGCTGATGTCTATGGTGA 5000
Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACGGTG 104872
||||||||||| ||||| |||||| || ||||| || || | ||| |
Sbjct 5001 TGAGTTTGAAGCTCTTTATGAGGGTTACGAGAAACAAGGTAAAGGCCG--TAAGACTATC 5058
Query 104873 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932
||| | | ||| | |||| ||| || | || || ||||| || | || | |
Sbjct 5059 AAGGCTCAAAAGCTTTGGTATTCTATCCTCGAGGCACAGACTGAGACAGGAAACCCTTTC 5118
Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992
|||||||||||||| || || ||| ||||||| |||||||||||| | || |||
Sbjct 5119 ATGCTTTACAAAGATGCTTGCAACAAAAAGAGCAATCAAAAGAATCTCGGCACAATCCGC 5178
Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052
|| ||||| | || || |||||| | |||| | | |||||| ||| |||
Sbjct 5179 AGCTCCAACTTGTGCACGGAAATCGTCGAATACTCTGCACCTGATGAGGTTGCTTGCTGT 5238
Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTTGATT 105110
|| | || || || |||||||| | | ||| | || | | | | || | |||||
Sbjct 5239 AATTTGGCTTCTATTGCTCTCCCAACCTTTGTCAA--CATGGCCGAGGGAACTTATGATT 5296
Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170
|||| || ||||| || || ||| || |||| | |||| |||| ||||
Sbjct 5297 TCCAAAAGCTTCACGAGGTCGTTCAAGTTGTTGTCAGAAACTTGAACAAGATTATCGATA 5356
Query 105171 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 105230
|||| || ||||| || || | | | ||| | | || || || |||| |
Sbjct 5357 TCAATTACTATCCCGTCGAAGAAGCCAGAAGAAGCAATTTCCGTCATCGACCTATTGCTG 5416
Query 105231 TCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG-TCGCC----ACGCATTTGATTC 105285
| |||||||| ||||| || |||| | ||||| | || || || |||| |||||
Sbjct 5417 TTGGTGTTCAAGGTCTTGCTGATG----CCTTCTTGGCTCTCCGTTTAC-CATTCGATTC 5471
Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345
|||||||||| | |||| | || ||||||||||| || |||| ||| ||||
Sbjct 5472 ACCCGAAGCGAAGCATCTCAACATCCAAATCTTTGAGACCATCTACCACGGTGCT-TTGA 5530
Query 105346 GGCGA---GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402
| ||||||| | || ||| || ||||| || | | ||| || |||||
Sbjct 5531 CTTCATCTGTTCAGA--TAGCCAAGGAATTAGGCCCATACGAGTCATATGAAGGATCTCC 5588
Query 105403 AGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 105461
|| || |||||| | |||||||| ||||||||||| | | | | | || | |
Sbjct 5589 AGTCTC-CAAGGGTGAGCTTCAATATGATATGTGGGGTGTTACTCCTACGGATCTTTGGG 5647
Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521
| ||||| |||||||| || |||||| | | ||| | || || ||| | || | |
Sbjct 5648 ATTGGGATTCTCTCAAGCAATCTATCAAGCAACATGGTATCCGGAATAGTTTGCTTGTTG 5707
Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581
|||| |||||||| ||| ||| | ||||| | ||| |||||||| || || || |
Sbjct 5708 CTCCTATGCCAACTGCCAGCACATCTCAAATTCTCGGTTTCAATGAATGTTTCGAGCCAT 5767
Query 105582 ACACGACGAACATCTATCTGA-GAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC--- 105637
|||| | ||||| || || | | | | || || ||||| | || |||
Sbjct 5768 ACACTTCCAACATTTA-CTCACGCCGTGTGTTGGCCGGTGAGTTCCAAGTCGTTAACCCA 5826
Query 105638 AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC-- 105695
|| ||| |||| || || || || || ||||| | | |||||| |||
Sbjct 5827 TGGCTTCTTAAGGATTTGGTC---GACATGGGACTTTGGTCTGATAACATGAAGAATCGT 5883
Query 105696 -TCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAA 105753
|||| | ||| ||||||||||||||||||||| | |||||| || |||||
Sbjct 5884 ATCATCGCTGA----TGGTGGTTCCATTCAAAATATTCCCAACATTCCAGCCGAGATTAA 5939
Query 105754 GAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTG---ACATGGCCGC 105810
| ||| || |||||||||||| | || || ||||| | ||||||||
Sbjct 5940 AGCTCTCTACAAGACCGTTTGGGAAATC--TCTCAACGA-AACATTGTTCAAATGGCCGC 5996
Query 105811 AGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAAC 105870
||| |||||| |||||||||||| |||| ||||| | |||| | || ||
Sbjct 5997 AGACCGTGGTGCTTTCATTGATCAATCTCAATCGATGAACATTCACATGAAGGACCCTAC 6056
Query 105871 GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGAT 105930
||| |||| || |||| ||||| | | ||||| ||||||||| || || ||
Sbjct 6057 AATGGGCAAGATCACTTCCATGCATTTCGCTGGATGGAAATTGGGTCTCAAGACTGGAAT 6116
Query 105931 GTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGAACCAGA 105987
||| || ||||| ||| ||| || |||||||| |||| | | || | |||
Sbjct 6117 GTACTATCTCCGTACTATGGCTGCTTCGGCACCAATTCAATTCACTGTCGATCAAGA 6173
>seq10338
Length=29807
Score = 143 bits (158), Expect = 3e-29
Identities = 161/213 (76%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 94790
||||| || |||||| | ||||| || ||||||||| | | ||| | | ||||||
Sbjct 12918 ACAGTCCCTTGTATTAAGAAGAAGGCCGATTGGGCTGTTAGATGGATCCAAGACAAAGAA 12977
Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850
| | | |||||| | || ||| ||||||| || |||||| |||||||||||| |||
Sbjct 12978 TC-TACATTTGCTCAACGTCTCGTCGCATTCGCTGCTGTTGAAGGTATCTTCTTCAGTGG 13036
Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910
||| ||| | |||| | |||||||||||||| ||| | ||| | ||||| |||||
Sbjct 13037 TTCATTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTC 13096
Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943
||||||||| ||||| ||||||||||| || ||
Sbjct 13097 CAACGAGCTCATCTCCCGTGACGAGGGTCTTCA 13129
>seq5810
Length=707
Score = 104 bits (114), Expect = 3e-17
Identities = 186/269 (69%), Gaps = 2/269 (1%)
Strand=Plus/Plus
Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGAC 104868
|| |||||||| || ||||||||| | ||||||||| |||| || || ||| | |||
Sbjct 401 GGCGAGGAGTTCGATGCCCTTTACGCCAAGTACGAGCAAGAGGGCCGTGGCCGCAA-GAC 459
Query 104869 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928
| ||| | | ||| | || |||||| || | || ||||||||||||| ||
Sbjct 460 CATCAAGGCTCAGAAACTCTGGTATGCCATTCTCGAGGCCCAGACCGAGACTGGTAACCC 519
Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988
| |||||| ||||| || ||||| ||| |||||||| || ||||| ||||| ||
Sbjct 520 CTTCATGCTCTACAAGGATGCCTGCAACAGGAAGAGTAACCAGAAGAACCTGGGTACTAT 579
Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048
|| || || || || || || ||| | || | | | | |||||| ||||||
Sbjct 580 TCGCAGCTCTAACCTGTGCACTGAGATCATTGAGTACAGTGCCCCTGATGAGGTGGCTGT 639
Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCA 105077
|| ||||| || || |||| |||||||
Sbjct 640 TTGCAACCTGGCTTCCCTCGCCCTCCCCA 668
>seq10051
Length=55976
Score = 82.4 bits (90), Expect = 9e-11
Identities = 116/163 (71%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 154194 AAGTCAAAGTCGTTCTTTTCAATCACGGAGACAAAGACTTTGAGGTAAAGAGGGGTGAGC 154253
||||||||||| | || ||||| |||||||| ||||| || || || ||| ||| || |
Sbjct 28579 AAGTCAAAGTCTTGCTGTTCAACCACGGAGAGAAAGATTTCGATGTCAAGGAGGGAGATC 28638
Query 154254 GCATCGCACAACTTGTTCTTGAGAGGTGTGAGACACCCGATGTGGAGGAAATTGGCTTCC 154313
| || || ||| | || | |||||| | | ||||| || || |||| | | |
Sbjct 28639 GTATTGCGCAATTGGTGTTGGAGAGGATTTATACACCTGAGGTTATGGAAGTGGAAGTTT 28698
Query 154314 TTGAAGAGACGGAGAGGGGTGCAGGCGGATTTGGTTCTACCGG 154356
| ||||||| | | ||||||| || || |||||| ||||||
Sbjct 28699 TGGAAGAGAGCGTGCGGGGTGCTGGAGGGTTTGGTAGTACCGG 28741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583174936719480
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