Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq10763 149 7e-31 seq10338 120 3e-22 >seq10763 Length=10051 Score = 149 bits (164), Expect = 7e-31 Identities = 208/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 19413 ACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGG 19472 |||||||||| || ||||| || || |||||||| || || || || ||| | || || | Sbjct 4715 ACGGTATCGTTCCTATGCTTCGAGTTTTCAACAATACCGCTAGATATGTCGATCAAGGTG 4774 Query 19473 GCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGG 19532 | ||| ||| || | |||||||||||||| || |||||||| ||||| ||| | | Sbjct 4775 GTAACAAGCGCCCTGGTGCATTCGCCATCTACCTTGAACCATGGCATGCGGATGTCTTTG 4834 Query 19533 ATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCA 19592 | || | || || || ||| || || | ||||| | || ||||||||||| Sbjct 4835 AGTTTTTGGATCTCCGAAAGAATCATGGAAAGGAGGAAGTTCGAGCACGCGACCTCTTTT 4894 Query 19593 CGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACC 19652 ||| | |||||||| || || |||||| || ||||| ||| ||| ||| ||| | Sbjct 4895 ATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACGGAGATTGGACAC 4954 Query 19653 TGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704 | |||||||| ||||||| |||||| | | || ||||| || || | ||| Sbjct 4955 TCATGTGCCCCAACGAATGTCCTGGCTTGGCTGATGTCTATGGTGATGAGTT 5006 Score = 147 bits (162), Expect = 2e-30 Identities = 204/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 79306 TCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCG 79365 || ||||||||||| | || ||| || || |||| |||||||| || ||| || || Sbjct 5000 TCACCATAGACATCAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCCG 4941 Query 79366 TCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGG 79425 | ||| ||||| || ||||||||| || || ||||| ||||| ||||||||||| Sbjct 4940 TTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGT 4881 Query 79426 CAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCG 79485 || | ||||| | || || ||| || || || | ||| || | || || || Sbjct 4880 GCTCGAACTTCCTCCTTTCCATGATTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCA 4821 Query 79486 TGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACG 79545 ||||| || || || ||||||||||| | ||| ||||||| || || || | ||| Sbjct 4820 TGCCATGGTTCAAGGTAGATGGCGAATGCACCAGGGCGCTTGTTACCACCTTGATCGACA 4761 Query 79546 TACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGT 79591 || | || || |||||||||||||| ||||| || ||||| |||| Sbjct 4760 TATCTAGCGGTATTGTTGAAAACTCGAAGCATAGGAACGATACCGT 4715 >seq10338 Length=29807 Score = 120 bits (132), Expect = 3e-22 Identities = 311/466 (67%), Gaps = 36/466 (8%) Strand=Plus/Plus Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCG 60029 ||||||| ||||||||| | || || || ||| || ||||| ||||||||| ||| || Sbjct 12982 CATTTGCTCAACGTCTCGTCGCATTCGC-TGCTGTTGAAGGTATCTTCTTCAGTGGTTCA 13040 Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 ||| |||| ||||||||||| |||||||| | ||| | || || | |||||||||| Sbjct 13041 TTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTTTGATGGCCGGTCTTACTTTCTCCAAC 13100 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACA 60148 ||||| || ||||| |||||||| || ||| || || || || | |||| || || Sbjct 13101 GAGCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGC-CTGCCTTCTCTTCTCGCA 13159 Query 60149 CCT-----AT------TGGAAAAATGCCCTTCCAAGGATAT--TCACAAGATTGTTCAGT 60195 | | || | ||| | ||| ||| ||||| | |||| ||| Sbjct 13160 CTTGAAGCATCGCCCAAGTAAACAAGCCGTTC--AGGATGTCATCAC-AGA--------- 13207 Query 60196 GGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTA 60255 |||| | | | ||| || ||| | || ||||| |||||||| ||| | || | Sbjct 13208 -GGCTGTTACAATTGAGCAGGAATTCTTGACCGAAGCTCTTCCATGTGCTCTCCTTGGCA 13266 Query 60256 TGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATGGCCC 60312 || || | | |||| || |||||| |||| ||||| ||||| || | |||| Sbjct 13267 TGAACTCGGATCTGATGAAACAATACATTGAGTTCGTCGCAGACCGTCTTCTTCTTGCCC 13326 Query 60313 AGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCT 60372 |||| | | | ||||| | | ||||| ||||||| ||||| | ||| | Sbjct 13327 ---TTGGTAATGAAAAGGTTTACCGTTCCACCAACCCATTCGACTTCATGGAAAACATTT 13383 Query 60373 CGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 | | | || |||||||||||||| |||||||| || | ||||| Sbjct 13384 CTCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTA 13429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548444050292880