Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq10763 156 5e-33 >seq10763 Length=10051 Score = 156 bits (172), Expect = 5e-33 Identities = 491/758 (65%), Gaps = 16/758 (2%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || ||| | ||||| |||||||| || | | | | | ||| || ||| || Sbjct 4420 ATGCGTGTTGCCGTTGGTATTCACGGTGATGATATCGAGAGCGCCATTGAAACCTACAAC 4479 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 |||||| | | || |||||||| ||||| | ||||| || ||| ||| ||||| Sbjct 4480 TTAATGTCCAACAAATACTTTACACACGCTTCTCCAACACTCTTCTCCGCGGGTACACCA 4539 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 || | || | || |||||||| | | |||||||| || || || || || Sbjct 4540 CAAGCCCAACTTTCTTCATGCTTCCTCATTGACATGAAGGAGGATAGTATTGATGGAATT 4599 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 || || || | ||| |||||| || || ||| | || ||||| ||| || || Sbjct 4600 TATGATACTTTGAAGATTTGTGCCATGATTTCTAAGAATGCTGGAGGTATTGGTCTCAAC 4659 Query 53435 -TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | | ||| | ||||| | || || || || || || || | | | Sbjct 4660 ATCCACAGAA--TTCGTGCTACTGGTGCATACATTGCTGGCACAAATGGAAATTCTAACG 4717 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| |||||||| || || |||||||| || || | || ||| | || |||||| Sbjct 4718 GTATCGTTCCTATGCTTCGAGTTTTCAACAATACCGCTAGATATGTCGATCAAGGTGGTA 4777 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 |||||| || | |||||||||||||| || || ||||| || || | | |||| Sbjct 4778 ACAAGCGCCCTGGTGCATTCGCCATCTACCTTGAACCATGGCATGCGGATGTCTTTGAGT 4837 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 || | || || || |||||| || | || || | || || ||||| ||| | Sbjct 4838 TTTTGGATCTCCGAAAGAATCATGGAAAGGAGGAAGTTCGAGCACGCGACCTCTTTTATG 4897 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || |||||||| || ||||||||| | || || ||| ||| || ||| || | Sbjct 4898 CCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACGGAGATTGGACACTCA 4957 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 ||||||| ||||| || || ||| | | |||||| ||||| |||||| | | | | Sbjct 4958 TGTGCCCCAACGAATGTCCTGGCTTGGCTGATGTCTATGGTGATGAGTTTGAAGCTCTTT 5017 Query 53793 ATCGGACGTACG------CAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 || | |||| || | | ||||| |||| ||||||| | || Sbjct 5018 ATGAGGGTTACGAGAAACAAGGTAAAGGCCG------TAAGACTATCAAGGCTCAAAAGC 5071 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| || | |||||| || ||| ||||| |||| || | |||| ||||| | Sbjct 5072 TTTGGTATTCTATCCTCGAGGCACAGACTGAGACAGGAAACCCTTTCATGCTTTACAAAG 5131 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944 || | |||| | |||||||| || ||||| ||||| Sbjct 5132 ATGCTTGCAACAAAAAGAGCAATCAAAAGAATCTCGGC 5169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547135442964600