Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq655 172 6e-38 seq10763 152 6e-32 seq5810 116 4e-21 seq10174 114 1e-20 >seq655 Length=7676 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| ||||| || ||||| || || | ||||| ||||| | Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| ||||| |||| ||||| || |||||||| || || || || ||| Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATCAG 3578 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| ||||||||||| | ||||||| || ||| || | || || || Sbjct 3577 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAAC 3518 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||||||||| ||| | ||| | || | |||||||| |||||| Sbjct 3517 ATCCAAAAGGAATCGACTTTACATTTGGTACTTCGTCTTCGTGGTGGA 3470 Score = 158 bits (174), Expect = 1e-33 Identities = 158/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487 ||||||||||||| || || ||||||||||| || || | || | ||| | ||| Sbjct 4188 TTACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAATGTCAAGA 4129 Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547 | || |||||||| |||||||| || ||||| ||||| |||||| | || |||||||| | Sbjct 4128 CCAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAACAGCGTTTGATCTTTGCTGGCA 4069 Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607 ||||||| ||||||| || ||||| | ||||| || |||| ||||| || ||||| | Sbjct 4068 AGCAACTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACTCTCC 4009 Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||| | |||||||| || || Sbjct 4008 ATCTCGTCCTCCGTCTTCGTGGCGG 3984 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| |||||||| |||||||| |||||||||||||| || || | || | Sbjct 3913 GTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCGAC 3854 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| |||| ||||| || |||||||| || ||||| || ||||| ||| | || Sbjct 3853 AACGTTAAGACTAAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGATC 3794 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || |||||||| |||||||| |||| || || || | ||||| || ||||||||||| Sbjct 3793 TTCGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAGGAA 3734 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| ||| | || | | ||||| ||||| Sbjct 3733 TCGACTCTCCATTTGGTTCTCAGACTTCGTGGTGG 3699 Score = 122 bits (134), Expect = 1e-22 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| | || || ||||| ||||| | || || || || Sbjct 3470 AATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAATCGTC 3411 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| || | ||| | || || || |||||||| || ||||| || || || Sbjct 3410 AGATACCATTGATAACGTAAAGACAAAGATCCAAGACAAGGAAGGTATTCCACCCGATCA 3351 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | || ||||| || |||||| | ||||| | | | || || | || ||||| Sbjct 3350 ACAACGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTAGAACTCTTTCGGATTATAA 3291 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||||||||| |||| | ||| | || | ||||| || ||||| ||| Sbjct 3290 CATCCAAAAGGAGAGCACTTTACATTTGGTGCTTCGTCTCCGTGGTGGTCAA 3239 >seq10763 Length=10051 Score = 152 bits (168), Expect = 6e-32 Identities = 513/796 (64%), Gaps = 7/796 (1%) Strand=Plus/Minus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 |||||||||||||||||||| || || ||||| || || || || || || | Sbjct 5207 TCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGCTC 5148 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || ||||||||| || ||||| |||| | ||| | || ||||| ||||| || | Sbjct 5147 TTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCTCG 5088 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 ||||| | | ||||| || | ||||||| ||| ||| ||| |||| | | Sbjct 5087 AGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTTTACCTTGTTTCTCG 5028 Query 81130 TACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCG 81189 || | ||| | || |||| |||| | | |||| | | | || || ||| Sbjct 5027 TAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGGACATTCG 4968 Query 81190 TTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGG 81249 || |||||||| || ||| || || || || ||| ||||||||| || || Sbjct 4967 TTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGA 4908 Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGC 81309 ||||||||||| || |||||||| || | ||||| | || || || || Sbjct 4907 ATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATTCTTTCGG 4848 Query 81310 AACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCC 81369 | || | ||| || | || |||||||||||||| || || || | ||||| | || Sbjct 4847 AGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGAATGCACCA 4788 Query 81370 TTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATA 81426 ||| | ||||| || | ||| || | || || ||| || || || | |||| Sbjct 4787 GGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACTCGAAGCATA 4728 Query 81427 GGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACC 81486 || | |||||| | || | || || || || | || | || | || || | Sbjct 4727 GGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTAGCACGAATT 4668 Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATG 81546 || ||| ||||| || || || | ||| |||||| ||||| |||| Sbjct 4667 CTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAAATCTTCAAA 4608 Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATC 81606 || ||||||||||| || || ||||| | |||||||||| | ||| || || | Sbjct 4607 GTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATGAAGAAAGT 4548 Query 81607 TGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664 || ||||| | | | || || ||| |||||||| | ||||| | || || || Sbjct 4547 TG--GGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATTTGT 4490 Query 81665 TTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAG 81724 | ||||| | || |||||||| || ||| ||||| |||||||||||||| | | Sbjct 4489 TGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCGTGAATACCAACGG 4430 Query 81725 CTACACGCATAAACAT 81740 | |||||||||| ||| Sbjct 4429 CAACACGCATAATCAT 4414 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || ||||||||||| || |||||||| ||| ||||| || | ||||| ||| Sbjct 6131 GTACGGAGATAGTACATTCCAGTCTTGAGACCCAATTTCCATCCAGCGAAATGCATGGAA 6072 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | ||| |||| || |||| ||||||| || ||||| ||| ||| Sbjct 6071 GTGATCTTGCCCATTGTAGGGTCCTTCATGTGAATGTTCATCGATTGAGATTGATCAATG 6012 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGA---ATTTCCCATACT 80214 ||||| ||||| ||||| ||||||| || ||| ||| || || |||||||| || Sbjct 6011 AAAGCACCACGGTCTGCGGCCATTTGAACAAT---GTTTCGTTGAGAGATTTCCCAAACG 5955 Query 80215 GT 80216 || Sbjct 5954 GT 5953 >seq5810 Length=707 Score = 116 bits (128), Expect = 4e-21 Identities = 190/271 (70%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 80887 ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCT 80943 ||||| | || ||| ||||| ||||| ||||| || |||||||| |||| || || Sbjct 675 ACAAAGGTGGGGAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCA-CT 617 Query 80944 GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGG 81003 ||| ||| | ||| || ||||||| ||||| ||| ||||||||||| |||||| Sbjct 616 GTA--CTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGG 559 Query 81004 TTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGT 81063 || ||| |||||| || ||||||||| |||| | ||| |||| |||||| ||| Sbjct 558 TTACTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGG 499 Query 81064 GACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCG 81123 | || ||| ||||| | ||| | | | ||||||| ||||||| ||| || Sbjct 498 GCCTCGAGAATGGCATACCAGAGTTTCTGAGCCTTGATGGTCTTGCGGCCACGGCCCTCT 439 Query 81124 GCCACATACTTGGCGTAAGCTTCGTCGAACT 81154 | | |||||||||||| | ||||||| Sbjct 438 TGCTCGTACTTGGCGTAAAGGGCATCGAACT 408 >seq10174 Length=26070 Score = 114 bits (126), Expect = 1e-20 Identities = 146/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 27400 ACTATAATGCAA-ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA 27458 || ||| || || | ||| |||||||| | || || ||||| || || |||||||| || Sbjct 24699 ACAATATTGAAATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGA 24640 Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518 || || | || | ||| | ||| | || ||||| ||||||||||||||||| || Sbjct 24639 ATCCTCCGACACTATCGACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCC 24580 Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGA 27578 ||||| || ||| | || || || || |||||||| || |||| || || ||| | || Sbjct 24579 GGACCAACAACGTTTGATCTTCGCCGGAAAGCAACTTGAAGATGGACGCACTCTATCCGA 24520 Query 27579 CTATAATGTCCAAAAGGAAT 27598 ||||| ||||||||| || Sbjct 24519 TTATAACATCCAAAAGGTAT 24500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570226443180240