Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq655 172 6e-38
seq10763 152 6e-32
seq5810 116 4e-21
seq10174 114 1e-20
>seq655
Length=7676
Score = 172 bits (190), Expect = 6e-38
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| ||||| || ||||| || || | ||||| ||||| |
Sbjct 3697 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATCACATTAGAGGTCGAGTCGTCT 3638
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| ||||| |||| ||||| || |||||||| || || || || |||
Sbjct 3637 GATACCATCGATAATGTGAAGACTAAGATTCAAGATAAGGAGGGCATCCCACCTGATCAG 3578
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| ||||| ||||||||||| | ||||||| || ||| || | || || ||
Sbjct 3577 CAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGATTACAAC 3518
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
||||||||||||| ||| | ||| | || | |||||||| ||||||
Sbjct 3517 ATCCAAAAGGAATCGACTTTACATTTGGTACTTCGTCTTCGTGGTGGA 3470
Score = 158 bits (174), Expect = 1e-33
Identities = 158/205 (77%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 27428 TTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGG 27487
||||||||||||| || || ||||||||||| || || | || | ||| | |||
Sbjct 4188 TTACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAATGTCAAGA 4129
Query 27488 CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTA 27547
| || |||||||| |||||||| || ||||| ||||| |||||| | || |||||||| |
Sbjct 4128 CCAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAACAGCGTTTGATCTTTGCTGGCA 4069
Query 27548 AGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTC 27607
||||||| ||||||| || ||||| | ||||| || |||| ||||| || ||||| |
Sbjct 4068 AGCAACTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACTCTCC 4009
Query 27608 ATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||| | |||||||| || ||
Sbjct 4008 ATCTCGTCCTCCGTCTTCGTGGCGG 3984
Score = 154 bits (170), Expect = 2e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| |||||||| |||||||| |||||||||||||| || || | || |
Sbjct 3913 GTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCGAC 3854
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| |||| ||||| || |||||||| || ||||| || ||||| ||| | ||
Sbjct 3853 AACGTTAAGACTAAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGATC 3794
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| |||||||| |||||||| |||| || || || | ||||| || |||||||||||
Sbjct 3793 TTCGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAGGAA 3734
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||||| ||| | || | | ||||| |||||
Sbjct 3733 TCGACTCTCCATTTGGTTCTCAGACTTCGTGGTGG 3699
Score = 122 bits (134), Expect = 1e-22
Identities = 166/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| ||||| | || || ||||| ||||| | || || || ||
Sbjct 3470 AATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTGGAAGTGGAATCGTC 3411
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||||| || | ||| | || || || |||||||| || ||||| || || ||
Sbjct 3410 AGATACCATTGATAACGTAAAGACAAAGATCCAAGACAAGGAAGGTATTCCACCCGATCA 3351
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| | || ||||| || |||||| | ||||| | | | || || | || |||||
Sbjct 3350 ACAACGTTTGATCTTTGCCGGAAAGCAATTGGAGGACGGTAGAACTCTTTCGGATTATAA 3291
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
|||||||||| |||| | ||| | || | ||||| || ||||| |||
Sbjct 3290 CATCCAAAAGGAGAGCACTTTACATTTGGTGCTTCGTCTCCGTGGTGGTCAA 3239
>seq10763
Length=10051
Score = 152 bits (168), Expect = 6e-32
Identities = 513/796 (64%), Gaps = 7/796 (1%)
Strand=Plus/Minus
Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009
|||||||||||||||||||| || || ||||| || || || || || || |
Sbjct 5207 TCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGCTC 5148
Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069
|| ||||||||| || ||||| |||| | ||| | || ||||| ||||| || |
Sbjct 5147 TTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCTCG 5088
Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129
||||| | | ||||| || | ||||||| ||| ||| ||| |||| | |
Sbjct 5087 AGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGGCCTTTACCTTGTTTCTCG 5028
Query 81130 TACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCG 81189
|| | ||| | || |||| |||| | | |||| | | | || || |||
Sbjct 5027 TAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGGACATTCG 4968
Query 81190 TTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGG 81249
|| |||||||| || ||| || || || || ||| ||||||||| || ||
Sbjct 4967 TTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGA 4908
Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGC 81309
||||||||||| || |||||||| || | ||||| | || || || ||
Sbjct 4907 ATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATTCTTTCGG 4848
Query 81310 AACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCC 81369
| || | ||| || | || |||||||||||||| || || || | ||||| | ||
Sbjct 4847 AGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGAATGCACCA 4788
Query 81370 TTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATA 81426
||| | ||||| || | ||| || | || || ||| || || || | ||||
Sbjct 4787 GGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACTCGAAGCATA 4728
Query 81427 GGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACC 81486
|| | |||||| | || | || || || || | || | || | || || |
Sbjct 4727 GGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTAGCACGAATT 4668
Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATG 81546
|| ||| ||||| || || || | ||| |||||| ||||| ||||
Sbjct 4667 CTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAAATCTTCAAA 4608
Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATC 81606
|| ||||||||||| || || ||||| | |||||||||| | ||| || || |
Sbjct 4607 GTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATGAAGAAAGT 4548
Query 81607 TGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664
|| ||||| | | | || || ||| |||||||| | ||||| | || || ||
Sbjct 4547 TG--GGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATTTGT 4490
Query 81665 TTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAG 81724
| ||||| | || |||||||| || ||| ||||| |||||||||||||| | |
Sbjct 4489 TGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCGTGAATACCAACGG 4430
Query 81725 CTACACGCATAAACAT 81740
| |||||||||| |||
Sbjct 4429 CAACACGCATAATCAT 4414
Score = 95.1 bits (104), Expect = 1e-14
Identities = 131/182 (72%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| || ||||||||||| || |||||||| ||| ||||| || | ||||| |||
Sbjct 6131 GTACGGAGATAGTACATTCCAGTCTTGAGACCCAATTTCCATCCAGCGAAATGCATGGAA 6072
Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157
||| ||| | | ||| |||| || |||| ||||||| || ||||| ||| |||
Sbjct 6071 GTGATCTTGCCCATTGTAGGGTCCTTCATGTGAATGTTCATCGATTGAGATTGATCAATG 6012
Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGA---ATTTCCCATACT 80214
||||| ||||| ||||| ||||||| || ||| ||| || || |||||||| ||
Sbjct 6011 AAAGCACCACGGTCTGCGGCCATTTGAACAAT---GTTTCGTTGAGAGATTTCCCAAACG 5955
Query 80215 GT 80216
||
Sbjct 5954 GT 5953
>seq5810
Length=707
Score = 116 bits (128), Expect = 4e-21
Identities = 190/271 (70%), Gaps = 6/271 (2%)
Strand=Plus/Minus
Query 80887 ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCT 80943
||||| | || ||| ||||| ||||| ||||| || |||||||| |||| || ||
Sbjct 675 ACAAAGGTGGGGAGGGCGAGGGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCA-CT 617
Query 80944 GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGG 81003
||| ||| | ||| || ||||||| ||||| ||| ||||||||||| ||||||
Sbjct 616 GTA--CTCAATGATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGG 559
Query 81004 TTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGT 81063
|| ||| |||||| || ||||||||| |||| | ||| |||| |||||| |||
Sbjct 558 TTACTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGG 499
Query 81064 GACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCG 81123
| || ||| ||||| | ||| | | | ||||||| ||||||| ||| ||
Sbjct 498 GCCTCGAGAATGGCATACCAGAGTTTCTGAGCCTTGATGGTCTTGCGGCCACGGCCCTCT 439
Query 81124 GCCACATACTTGGCGTAAGCTTCGTCGAACT 81154
| | |||||||||||| | |||||||
Sbjct 438 TGCTCGTACTTGGCGTAAAGGGCATCGAACT 408
>seq10174
Length=26070
Score = 114 bits (126), Expect = 1e-20
Identities = 146/200 (73%), Gaps = 1/200 (1%)
Strand=Plus/Minus
Query 27400 ACTATAATGCAA-ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA 27458
|| ||| || || | ||| |||||||| | || || ||||| || || |||||||| ||
Sbjct 24699 ACAATATTGAAATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGA 24640
Query 27459 GTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCC 27518
|| || | || | ||| | ||| | || ||||| ||||||||||||||||| ||
Sbjct 24639 ATCCTCCGACACTATCGACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCC 24580
Query 27519 AGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGA 27578
||||| || ||| | || || || || |||||||| || |||| || || ||| | ||
Sbjct 24579 GGACCAACAACGTTTGATCTTCGCCGGAAAGCAACTTGAAGATGGACGCACTCTATCCGA 24520
Query 27579 CTATAATGTCCAAAAGGAAT 27598
||||| ||||||||| ||
Sbjct 24519 TTATAACATCCAAAAGGTAT 24500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570226443180240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |