Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq655 149 4e-31 seq10174 102 5e-17 >seq655 Length=7676 Score = 149 bits (164), Expect = 4e-31 Identities = 168/220 (76%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||||||| | ||||||||||||||| ||||||||||| ||||| |||| Sbjct 3252 AGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTA 3311 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | ||| || |||||||| || ||||| ||||| || || || | || ||| Sbjct 3312 CCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCC 3371 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCT-TCGCTCTCCACTTCCACGG 34666 |||||| |||| ||||| || ||| || ||| || ||| || | |||||||||| | Sbjct 3372 TTGTCTTGGATC-TTTGTCTTTACGTTATCAATGGTATCTGACGAT-TCCACTTCCAACG 3429 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || || || || ||||| || ||||| Sbjct 3430 TAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3469 Score = 98.7 bits (108), Expect = 6e-16 Identities = 104/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||||||||| |||||||| ||||| || || |||||||| || | ||||| Sbjct 3717 ACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCTTCG 3776 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||||||||| || || || ||||| || || || || || | |||||||| ||| || Sbjct 3777 AGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCCTTATCT-TG 3835 Query 34618 ATCTTTTGTTTTAACG 34633 | || || |||||| Sbjct 3836 AATCTTAGTCTTAACG 3851 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | ||||||||| |||||| || ||||| || || ||| Sbjct 3984 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 4043 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || |||||||| || || ||||| || |||||||||||||| || || Sbjct 4044 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGG 4103 Query 34600 ACTCCCTCCTTGTC 34613 | |||||||| || Sbjct 4104 ATACCCTCCTTATC 4117 >seq10174 Length=26070 Score = 102 bits (112), Expect = 5e-17 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 ||||||| ||||||||||| || || || || | ||||||||||| || ||||| || | Sbjct 24503 CCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGA 24562 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 | ||||| ||||||||||| || | ||||||||||||| ||||| Sbjct 24563 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTT 24608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314684426172041