Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq655 149 4e-31
seq10174 102 5e-17
>seq655
Length=7676
Score = 149 bits (164), Expect = 4e-31
Identities = 168/220 (76%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||||||| | ||||||||||||||| ||||||||||| ||||| ||||
Sbjct 3252 AGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTA 3311
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || | ||| || |||||||| || ||||| ||||| || || || | || |||
Sbjct 3312 CCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCC 3371
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCT-TCGCTCTCCACTTCCACGG 34666
|||||| |||| ||||| || ||| || ||| || ||| || | |||||||||| |
Sbjct 3372 TTGTCTTGGATC-TTTGTCTTTACGTTATCAATGGTATCTGACGAT-TCCACTTCCAACG 3429
Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || || || || || || || ||||| || |||||
Sbjct 3430 TAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3469
Score = 98.7 bits (108), Expect = 6e-16
Identities = 104/136 (76%), Gaps = 1/136 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
|||||||||||||| |||||||| ||||| || || |||||||| || | |||||
Sbjct 3717 ACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCTTCG 3776
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
||||||||||| || || || ||||| || || || || || | |||||||| ||| ||
Sbjct 3777 AGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCCTTATCT-TG 3835
Query 34618 ATCTTTTGTTTTAACG 34633
| || || ||||||
Sbjct 3836 AATCTTAGTCTTAACG 3851
Score = 98.7 bits (108), Expect = 6e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||| | || | ||||||||| |||||| || ||||| || || |||
Sbjct 3984 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 4043
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || |||||||| || || ||||| || |||||||||||||| || ||
Sbjct 4044 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGG 4103
Query 34600 ACTCCCTCCTTGTC 34613
| |||||||| ||
Sbjct 4104 ATACCCTCCTTATC 4117
>seq10174
Length=26070
Score = 102 bits (112), Expect = 5e-17
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576
||||||| ||||||||||| || || || || | ||||||||||| || ||||| || |
Sbjct 24503 CCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGA 24562
Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622
| ||||| ||||||||||| || | ||||||||||||| |||||
Sbjct 24563 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTT 24608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314684426172041
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |