Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq655 102 6e-17 >seq655 Length=7676 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| || || ||||| || || ||||||||||| |||||||| Sbjct 3376 GACAAGGAAGGTATTCCACCCGATCAACAACGTTTGATCTTTGCCGGAAAGCAATTGGAG 3317 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | | || ||||| ||||||||||| ||||||||||| |||||||| | Sbjct 3316 GACGGTAGAACTCTTTCGGATTATAACATCCAAAAGGAGAGCACTTTACATTTGGTGCTT 3257 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 3256 CGTCTCCGTGGTGG 3243 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| | ||||| || || || || ||||| || | |||| ||| |||||| Sbjct 3583 GATCAGCAACGTCTCATTTTCGCTGGTAAGCAGTTGGAGGATGGCCGCACCTTATCCGAT 3524 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| || ||||| |||||||| | ||| | ||||| || Sbjct 3523 TACAACATCCAAAAGGAATCGACTTTACATTTGGTACTTCGTCTTCGTGGTGG 3471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355811322291279