Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq655 154 3e-32 seq10174 143 6e-29 seq10763 102 2e-16 seq2135 95.1 3e-14 seq9962 93.3 1e-13 >seq655 Length=7676 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| || || | || ||||| || || ||||||||||| || || | ||| || Sbjct 3704 ACGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGT 3763 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || || || |||||||| | ||||| || |||||||| | || Sbjct 3764 GCGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACC 3823 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || || ||||| || ||||| ||||| ||||| || ||||||||| || Sbjct 3824 CTCCTTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAG 3883 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 |||||| |||||||| || |||||||| || Sbjct 3884 AGTGATAGTCTTTCCGGTAAGAGTCTTGAC 3913 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 |||| ||| ||||||||||||||||||| ||| || || || || |||| ||||| || Sbjct 3272 AGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCC 3331 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| | |||||||| || || |||| ||||||||||| ||||||||| || Sbjct 3332 GGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTTGTCTT 3391 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||| || ||||| || || ||| || || | || || |||||||| || | ||| Sbjct 3392 TACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGT 3451 Query 211097 CTTTACAAACACCTGCATT 211115 ||| ||||| | |||||| Sbjct 3452 CTTAACAAAGATTTGCATT 3470 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || ||||| ||||| || |||||||| || || | |||||| Sbjct 3989 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGT 4048 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || |||||||| || ||||| | || |||||||||||||| | || Sbjct 4049 GCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGGATACC 4108 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| ||||| || || || ||||| ||||| || ||||||||| || Sbjct 4109 CTCCTTATCCTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCAACCTCAAG 4168 Query 211073 AGTGATCGTCTTTCCCGT 211090 ||||| ||||| || || Sbjct 4169 GGTGATGGTCTTGCCGGT 4186 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | || | ||| || || ||||||||||| ||||| | | ||| Sbjct 3476 ACGAAGACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGT 3535 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| |||||| || ||||| || || ||||| || ||||| || | || Sbjct 3536 GCGGCCATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCC 3595 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || || ||||| ||||| || |||||||| ||||| || ||||| | Sbjct 3596 CTCCTTATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAA 3655 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || || ||||| || || | |||||| Sbjct 3656 TGTGATTGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 >seq10174 Length=26070 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||||||||| | || || | ||||||||| || ||||| || |||||||| Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||||||||||| || |||| ||| |||||||| || ||||| || || || ||| Sbjct 24565 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 24624 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| ||| ||||| || ||||| ||||| ||||| | ||||| || || Sbjct 24625 ATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683 >seq10763 Length=10051 Score = 102 bits (112), Expect = 2e-16 Identities = 194/279 (70%), Gaps = 14/279 (5%) Strand=Plus/Minus Query 178094 TTCTTTTGGTTGCTCTTTCTG---CAAATGGCATCTTTGTACGCAATGAAGGGCATTCCC 178150 |||||||| ||||||||| || ||| ||||||||||| ||||| || |||| Sbjct 5162 TTCTTTTGATTGCTCTTTTTGTTGCAA---GCATCTTTGTAAAGCATGAAAGGGTTTCCT 5106 Query 178151 ACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTG 178210 ||||| || ||| |||| || || |||||||| || || || |||||| | Sbjct 5105 GTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGG 5046 Query 178211 GCTTTTCCTTCATTCTCGTA--CTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACAT 178268 |||| |||| |||||||| | | | |||||| || || || |||||||||| Sbjct 5045 CCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCT--TCAAACTCATCACCATAGACAT 4988 Query 178269 CATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCG-TCTTCCTTC-AC 178326 || | | || ||| || |||||||| | ||| |||| | ||| |||| ||| || Sbjct 4987 CAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTT--TTCAAC 4930 Query 178327 TCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || ||||||||||| || | |||||| |||||| || Sbjct 4929 ACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAA 4891 >seq2135 Length=2596 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||| ||||||||||| ||| || || ||||| ||||| ||| ||||||||| Sbjct 6 TCCCTCCTTATCCTGGATCTTGGTTTTGACATTGTCGATAGTGTCGGAGGATTCAACCTC 65 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || |||||||| ||||| || || | |||||| Sbjct 66 GAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 110 >seq9962 Length=55051 Score = 93.3 bits (102), Expect = 1e-13 Identities = 122/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982 ||| ||||||| |||||||| | ||| | || ||||| |||| | ||| ||||| || Sbjct 10933 CTCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCAA-TACTTTCCTGCAAA 10991 Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 || | ||||||||||| || |||| |||||||||| ||||||||| | || || Sbjct 10992 TATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCTTTGTCTGGACATT 11051 Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || || ||| || || | || || |||||||| || Sbjct 11052 ATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGT 11099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158977092294605