Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq655 154 3e-32
seq10174 143 6e-29
seq10763 102 2e-16
seq2135 95.1 3e-14
seq9962 93.3 1e-13
>seq655
Length=7676
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||||||||| || || | || ||||| || || ||||||||||| || || | ||| ||
Sbjct 3704 ACGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGT 3763
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||| || || || || |||||||| | ||||| || |||||||| | ||
Sbjct 3764 GCGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACC 3823
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| || || ||||| || ||||| ||||| ||||| || ||||||||| ||
Sbjct 3824 CTCCTTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAG 3883
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|||||| |||||||| || |||||||| ||
Sbjct 3884 AGTGATAGTCTTTCCGGTAAGAGTCTTGAC 3913
Score = 143 bits (158), Expect = 6e-29
Identities = 151/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976
|||| ||| ||||||||||||||||||| ||| || || || || |||| ||||| ||
Sbjct 3272 AGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCC 3331
Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036
|| ||||| | |||||||| || || |||| ||||||||||| ||||||||| ||
Sbjct 3332 GGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTTGTCTT 3391
Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096
||||| || ||||| || || ||| || || | || || |||||||| || | |||
Sbjct 3392 TACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGT 3451
Query 211097 CTTTACAAACACCTGCATT 211115
||| ||||| | ||||||
Sbjct 3452 CTTAACAAAGATTTGCATT 3470
Score = 141 bits (156), Expect = 2e-28
Identities = 150/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| || || ||||| ||||| || |||||||| || || | ||||||
Sbjct 3989 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGT 4048
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || || |||||||| || ||||| | || |||||||||||||| | ||
Sbjct 4049 GCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGGATACC 4108
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| ||||| ||||| || || || ||||| ||||| || ||||||||| ||
Sbjct 4109 CTCCTTATCCTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCAACCTCAAG 4168
Query 211073 AGTGATCGTCTTTCCCGT 211090
||||| ||||| || ||
Sbjct 4169 GGTGATGGTCTTGCCGGT 4186
Score = 131 bits (144), Expect = 4e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | || | ||| || || ||||||||||| ||||| | | |||
Sbjct 3476 ACGAAGACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGT 3535
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| |||| |||||| || ||||| || || ||||| || ||||| || | ||
Sbjct 3536 GCGGCCATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCC 3595
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| || || ||||| ||||| || |||||||| ||||| || ||||| |
Sbjct 3596 CTCCTTATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAA 3655
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| |||||||| || || ||||| || || | ||||||
Sbjct 3656 TGTGATTGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697
>seq10174
Length=26070
Score = 143 bits (158), Expect = 6e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||||||||| | || || | ||||||||| || ||||| || ||||||||
Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||||||||||| || |||| ||| |||||||| || ||||| || || || |||
Sbjct 24565 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 24624
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| ||| ||||| || ||||| ||||| ||||| | ||||| || ||
Sbjct 24625 ATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683
>seq10763
Length=10051
Score = 102 bits (112), Expect = 2e-16
Identities = 194/279 (70%), Gaps = 14/279 (5%)
Strand=Plus/Minus
Query 178094 TTCTTTTGGTTGCTCTTTCTG---CAAATGGCATCTTTGTACGCAATGAAGGGCATTCCC 178150
|||||||| ||||||||| || ||| ||||||||||| ||||| || ||||
Sbjct 5162 TTCTTTTGATTGCTCTTTTTGTTGCAA---GCATCTTTGTAAAGCATGAAAGGGTTTCCT 5106
Query 178151 ACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTG 178210
||||| || ||| |||| || || |||||||| || || || |||||| |
Sbjct 5105 GTCTCAGTCTGTGCCTCGAGGATAGAATACCAAAGCTTTTGAGCCTTGATAGTCTTACGG 5046
Query 178211 GCTTTTCCTTCATTCTCGTA--CTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACAT 178268
|||| |||| |||||||| | | | |||||| || || || ||||||||||
Sbjct 5045 CCTTTACCTTGTTTCTCGTAACCCTCATAAAGAGCT--TCAAACTCATCACCATAGACAT 4988
Query 178269 CATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCG-TCTTCCTTC-AC 178326
|| | | || ||| || |||||||| | ||| |||| | ||| |||| ||| ||
Sbjct 4987 CAGCCAAGCCAGGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTT--TTCAAC 4930
Query 178327 TCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
|| ||||||||||| || | |||||| |||||| ||
Sbjct 4929 ACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAAAA 4891
>seq2135
Length=2596
Score = 95.1 bits (104), Expect = 3e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||| ||||| ||||||||||| ||| || || ||||| ||||| ||| |||||||||
Sbjct 6 TCCCTCCTTATCCTGGATCTTGGTTTTGACATTGTCGATAGTGTCGGAGGATTCAACCTC 65
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| ||||| || || |||||||| ||||| || || | ||||||
Sbjct 66 GAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 110
>seq9962
Length=55051
Score = 93.3 bits (102), Expect = 1e-13
Identities = 122/168 (73%), Gaps = 1/168 (1%)
Strand=Plus/Plus
Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982
||| ||||||| |||||||| | ||| | || ||||| |||| | ||| ||||| ||
Sbjct 10933 CTCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCAA-TACTTTCCTGCAAA 10991
Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042
|| | ||||||||||| || |||| |||||||||| ||||||||| | || ||
Sbjct 10992 TATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCTTTGTCTGGACATT 11051
Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| ||||| || || ||| || || | || || |||||||| ||
Sbjct 11052 ATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGT 11099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158977092294605
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |