Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq655 143 6e-29 seq10174 134 3e-26 seq9962 129 1e-24 seq10127 95.1 3e-14 seq4788 91.5 4e-13 >seq655 Length=7676 Score = 143 bits (158), Expect = 6e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 || ||||||| || ||||| | | |||||| || || || | ||||| || || ||| Sbjct 3279 TCCTTTTGGATGTTATAATCCGAAAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAG 3338 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || | |||||||| ||||| ||||||||||||||||||||||||||| ||| || Sbjct 3339 ATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTA 3398 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 || ||||| ||||| | |||||| || ||||| || ||||| || |||||||| || | Sbjct 3399 TCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACA 3458 Query 225703 AACACTTGCATT 225714 || | ||||||| Sbjct 3459 AAGATTTGCATT 3470 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||| || || | |||||||| ||||| ||||||| ||||| |||| | || Sbjct 3704 ACGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGT 3763 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || ||||||||||| | ||||| || || || || ||||| Sbjct 3764 GCGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACC 3823 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| ||||| ||| || ||||| ||||| || | ||| || || | Sbjct 3824 CTCCTTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAG 3883 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || | ||| || Sbjct 3884 AGTGATAGTCTTTCCGGTAAGAGTCTT 3910 >seq10174 Length=26070 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| || ||||||| | ||| | |||||||| || ||||| || |||||||| Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||||||||||| || ||||| || ||||||||||| ||||| ||| ||| ||| Sbjct 24565 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 24624 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| |||| ||| || || | ||||| ||||| |||||||| || || | ||| Sbjct 24625 ATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683 >seq9962 Length=55051 Score = 129 bits (142), Expect = 1e-24 Identities = 133/173 (77%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 || ||||||| ||| ||||| | | | |||| ||||| || | | ||| || || || Sbjct 10934 TCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCAA-TACTTTCCTGCAAAT 10992 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || | ||||||||||||||| |||||| |||||||||||||||||||| || ||| Sbjct 10993 ATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCTTTGTCTGGACATTA 11052 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || ||||| ||||| | |||||| || ||||| || ||||| || ||||| || Sbjct 11053 TCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGTCAAGGT 11105 >seq10127 Length=40622 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||| |||||||| || || || || ||||||||||||||||||||||| Sbjct 33045 GAAAATTTGTCCATCGGTAATAGAAATGACGTTGGTTGGGATATAAGCAGAAACATCACC 33104 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| ||||||| || || | || || | ||||||||||| Sbjct 33105 ACCTTGAGTTTCGATAATTGGGAGAGCAGTCAAGGATCCACCACC 33149 >seq4788 Length=1312 Score = 91.5 bits (100), Expect = 4e-13 Identities = 82/101 (81%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTG--ATAAAGGATAGGATCGCCTCCGCCT 370729 |||||| || ||||| ||||||||||||||||| ||||| |||||||| || || || Sbjct 877 TTCAGGGTGTCCAAAGAATCAGAATAAATGTTGGAATAAA--ATAGGATCACCACCACCA 934 Query 370730 GATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | ||||| || |||||||||||||||||||||||| Sbjct 935 GCTACTTCAAAGAATGAAGTATTAAAATTTCTATCAGTTAA 975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192351255613238