Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq10763 484 9e-132
>seq10763
Length=10051
Score = 484 bits (536), Expect = 9e-132
Identities = 1351/2062 (66%), Gaps = 43/2062 (2%)
Strand=Plus/Minus
Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841
|| || |||||||| | || || | | ||||| ||||||||||| ||||| || |||
Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102
Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901
|||| ||||||| |||||||||| || | ||| |||| || ||
Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042
Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961
||||| |||||||| ||| |||||| |||||||| || | || || ||||||| | |
Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982
Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021
||| | ||||| |||||||||| || ||| | | ||| || || |||||| |
Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922
Query 77022 TTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078
|| | |||||||||||||||||||||| | || || |||||| || | |||| |
Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862
Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138
|| | | | | || ||| | |||| || || ||||| | ||| || || ||
Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802
Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198
| ||| || | || | |||||| || || ||||| || | | |||||||| ||
Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742
Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258
| |||||||| || |||||||||||||| || || | |||||||| | || ||||
Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACCA 5682
Query 77259 TGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCC 77318
||| |||| | || ||| | | ||||||||||||||| | ||| |||| ||
Sbjct 5681 TGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACACCC 5622
Query 77319 CAAAGATCGTATTGTAGAATTCCGTT----ACTAGCATATGATCCATTATATGTTTCATA 77374
|| | ||| ||||| || || || ||| | ||||| | ||||| || ||
Sbjct 5621 CACATATCATATTGAAGCTCACCCTTGGAGACTGGA----GATCCTTCATATGACTCGTA 5566
Query 77375 AGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTC 77434
|| ||| | | |||| | | | | ||| || |||| || || || ||
Sbjct 5565 TGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAAGCACCGTGGTAGATGGTCTC 5506
Query 77435 GAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAAT 77494
|| || | | ||||||| | ||||| ||| || || || | | | |
Sbjct 5505 AAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGGTAAACGGAGAGCCAA 5446
Query 77495 AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 77554
|||||||| || | || ||||| |||| | ||||||||| ||| | |||| |
Sbjct 5445 GAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGCTTCT 5386
Query 77555 TTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAAC 77614
| | |||||| | ||||| ||||| || || ||||| || || | ||||| |||||
Sbjct 5385 TCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGACAAC 5326
Query 77615 TACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTA------TAACAAA 77668
|||| ||| || || | || || | |||||| | |||| || | |||||
Sbjct 5325 AACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGTTGACAAA 5266
Query 77669 CATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA---TA 77725
| | ||| ||||| || | |||||| || ||||||| || || ||| ||
Sbjct 5265 GGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAG-GT--GCAGAGTA 5209
Query 77726 TTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCT 77785
|| | || || || || | || | ||| ||||| ||||| | ||| |||||
Sbjct 5208 TTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGCT 5149
Query 77786 CTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTC 77845
|||||| ||||| | || || ||||| || || || | || || ||| |||||| ||
Sbjct 5148 CTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCTC 5089
Query 77846 GATAATAGATTTCCAGACGACTCTAGCTTTT-ATCATAGAT--TTGTATCGCCTCTCTCT 77902
|| ||||| | ||| | |||||| | | | ||| | || |||| | ||
Sbjct 5088 GAGGATAGAATACCAAA--------GCTTTTGAGCCTTGATAGTCTTACGGCCTTTACCT 5037
Query 77903 T-----TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957
| || || ||| || |||||| ||||| || | |||||| |||| |||
Sbjct 5036 TGTTTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCA 4977
Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017
|| ||||| || |||||||| | || ||| || || | | | ||| || ||||| |||
Sbjct 4976 GGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAG 4917
Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077
||||| || ||||| || ||| ||| || || || | || | ||| || ||||| |
Sbjct 4916 AGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGA 4857
Query 78078 TTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCC 78137
|||||| ||||| | |||||| | | ||| | |||||||||||| || || || ||
Sbjct 4856 TTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCG 4797
Query 78138 ATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197
| | ||||| || || ||||| || ||||| | |||||| ||||| || || |||||
Sbjct 4796 AATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACT 4737
Query 78198 CTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTT 78257
| | ||| |||| ||||||||||| |||||||||| |||| ||| || ||| |
Sbjct 4736 CGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTA 4677
Query 78258 GCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAA 78317
|| ||||| | ||| | || || ||||| || ||||||| || | || |||
Sbjct 4676 GCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAA 4617
Query 78318 CGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAG 78377
||||| ||||| || || || || ||||| || ||| |||||| || || || ||
Sbjct 4616 ATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCAT 4557
Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437
||| | ||| || || || || || | ||| ||||| || || |||||
Sbjct 4556 GAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAG 4497
Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAAT 78496
|||| | || | || ||||| |||||||| || || || || || | |||||
Sbjct 4496 TATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAAT 4438
Query 78497 TCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTT 78556
|| || || |||||||| | ||| || || || | |||| | || || |
Sbjct 4437 ACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGCG 4378
Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTC 78616
| | ||||||| | || | ||| || || || || || | ||| ||||||| ||
Sbjct 4377 GAGGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATC 4318
Query 78617 GTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGTAGT 78676
||||| ||| |||| || |||| | | | | | |||| | || ||| | |
Sbjct 4317 GTAAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCCT 4259
Query 78677 TG-AAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCA 78735
|| ||| || |||||| | ||||||||| | || |||| ||| || |
Sbjct 4258 TGCTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTGA 4199
Query 78736 TTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAG 78795
| |||| ||| |||| || |||| |||||| ||||| || || || || | ||||
Sbjct 4198 TGACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCAG 4139
Query 78796 CTAGAATAGCATAATCAGGATG 78817
||| || |||||||| |||||
Sbjct 4138 CTAAGATGGCATAATCGGGATG 4117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694566536069280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |