Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10763 484 9e-132 >seq10763 Length=10051 Score = 484 bits (536), Expect = 9e-132 Identities = 1351/2062 (66%), Gaps = 43/2062 (2%) Strand=Plus/Minus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || || |||||||| | || || | | ||||| ||||||||||| ||||| || ||| Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 |||| ||||||| |||||||||| || | ||| |||| || || Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 ||||| |||||||| ||| |||||| |||||||| || | || || ||||||| | | Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982 Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021 ||| | ||||| |||||||||| || ||| | | ||| || || |||||| | Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922 Query 77022 TTTG---TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078 || | |||||||||||||||||||||| | || || |||||| || | |||| | Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862 Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138 || | | | | || ||| | |||| || || ||||| | ||| || || || Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802 Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198 | ||| || | || | |||||| || || ||||| || | | |||||||| || Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742 Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258 | |||||||| || |||||||||||||| || || | |||||||| | || |||| Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACCA 5682 Query 77259 TGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCC 77318 ||| |||| | || ||| | | ||||||||||||||| | ||| |||| || Sbjct 5681 TGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACACCC 5622 Query 77319 CAAAGATCGTATTGTAGAATTCCGTT----ACTAGCATATGATCCATTATATGTTTCATA 77374 || | ||| ||||| || || || ||| | ||||| | ||||| || || Sbjct 5621 CACATATCATATTGAAGCTCACCCTTGGAGACTGGA----GATCCTTCATATGACTCGTA 5566 Query 77375 AGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTC 77434 || ||| | | |||| | | | | ||| || |||| || || || || Sbjct 5565 TGGGCCTAATTCCTTGGCTATCTGAACAGATGAAGTCAAAGCACCGTGGTAGATGGTCTC 5506 Query 77435 GAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAAT 77494 || || | | ||||||| | ||||| ||| || || || | | | | Sbjct 5505 AAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGGTAAACGGAGAGCCAA 5446 Query 77495 AAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAAT 77554 |||||||| || | || ||||| |||| | ||||||||| ||| | |||| | Sbjct 5445 GAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGCTTCT 5386 Query 77555 TTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAAC 77614 | | |||||| | ||||| ||||| || || ||||| || || | ||||| ||||| Sbjct 5385 TCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGACAAC 5326 Query 77615 TACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCTA------TAACAAA 77668 |||| ||| || || | || || | |||||| | |||| || | ||||| Sbjct 5325 AACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGTTGACAAA 5266 Query 77669 CATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA---TA 77725 | | ||| ||||| || | |||||| || ||||||| || || ||| || Sbjct 5265 GGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAG-GT--GCAGAGTA 5209 Query 77726 TTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCT 77785 || | || || || || | || | ||| ||||| ||||| | ||| ||||| Sbjct 5208 TTCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGCT 5149 Query 77786 CTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTC 77845 |||||| ||||| | || || ||||| || || || | || || ||| |||||| || Sbjct 5148 CTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCTC 5089 Query 77846 GATAATAGATTTCCAGACGACTCTAGCTTTT-ATCATAGAT--TTGTATCGCCTCTCTCT 77902 || ||||| | ||| | |||||| | | | ||| | || |||| | || Sbjct 5088 GAGGATAGAATACCAAA--------GCTTTTGAGCCTTGATAGTCTTACGGCCTTTACCT 5037 Query 77903 T-----TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 | || || ||| || |||||| ||||| || | |||||| |||| ||| Sbjct 5036 TGTTTCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCA 4977 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || ||||| || |||||||| | || ||| || || | | | ||| || ||||| ||| Sbjct 4976 GGACATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAG 4917 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077 ||||| || ||||| || ||| ||| || || || | || | ||| || ||||| | Sbjct 4916 AGATCTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGA 4857 Query 78078 TTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCC 78137 |||||| ||||| | |||||| | | ||| | |||||||||||| || || || || Sbjct 4856 TTCTTTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCG 4797 Query 78138 ATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197 | | ||||| || || ||||| || ||||| | |||||| ||||| || || ||||| Sbjct 4796 AATGCACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACT 4737 Query 78198 CTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTT 78257 | | ||| |||| ||||||||||| |||||||||| |||| ||| || ||| | Sbjct 4736 CGAAGCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTA 4677 Query 78258 GCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAA 78317 || ||||| | ||| | || || ||||| || ||||||| || | || ||| Sbjct 4676 GCACGAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAA 4617 Query 78318 CGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAG 78377 ||||| ||||| || || || || ||||| || ||| |||||| || || || || Sbjct 4616 ATCTTCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCAT 4557 Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||| | ||| || || || || || | ||| ||||| || || ||||| Sbjct 4556 GAAGAAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAG 4497 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAAT 78496 |||| | || | || ||||| |||||||| || || || || || | ||||| Sbjct 4496 TATTTGTTGGACATTAAGTTGTAGGTTTCAATGGCGCTCTCGATATCATCACCG-TGAAT 4438 Query 78497 TCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTT 78556 || || || |||||||| | ||| || || || | |||| | || || | Sbjct 4437 ACCAACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGCG 4378 Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTC 78616 | | ||||||| | || | ||| || || || || || | ||| ||||||| || Sbjct 4377 GAGGAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATC 4318 Query 78617 GTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGTAGT 78676 ||||| ||| |||| || |||| | | | | | |||| | || ||| | | Sbjct 4317 GTAAACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCCT 4259 Query 78677 TG-AAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCA 78735 || ||| || |||||| | ||||||||| | || |||| ||| || | Sbjct 4258 TGCTAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTGA 4199 Query 78736 TTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAG 78795 | |||| ||| |||| || |||| |||||| ||||| || || || || | |||| Sbjct 4198 TGACATGCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCAG 4139 Query 78796 CTAGAATAGCATAATCAGGATG 78817 ||| || |||||||| ||||| Sbjct 4138 CTAAGATGGCATAATCGGGATG 4117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694566536069280