Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10763 455 5e-123 seq10338 141 1e-28 >seq10763 Length=10051 Score = 455 bits (504), Expect = 5e-123 Identities = 1346/2060 (65%), Gaps = 39/2060 (2%) Strand=Plus/Minus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 ||||| ||||| || | || || | | ||||| ||||||||||| ||||| || ||| Sbjct 6161 GTGAATTGAATTGGTGCCGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 6102 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496 |||| ||||||| |||||||||| || | ||| | || || || Sbjct 6101 CCCAATTTCCATCCAGCGAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 6042 Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556 ||||| |||||||| ||| |||||| |||||||| || | || || ||||||| | | Sbjct 6041 TGAATGTTCATCGATTGAGATTGATCAATGAAAGCACCACGGTCTGCGGCCATTTGAACA 5982 Query 75557 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA 75616 ||| | ||||| |||||||||| || ||| | | ||| || || |||||| Sbjct 5981 ATGTTTCGTTGAGAGATTTCCCAAACGGTCTTGTAGAGAGCTTTAATCTCGGCTGGAATG 5922 Query 75617 TTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTC 75673 || | ||||||||||||| || ||||||| || || |||||| || | |||| | Sbjct 5921 TTGGGAATATTTTGAATGGAACCACCATCAGCGATGATACGATTCTTCATGTTATCAGAC 5862 Query 75674 CACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCA 75733 || | | | ||| ||| | |||| || || ||||| | ||| || || || Sbjct 5861 CAAAGTCCCATGTCGACCAAATCCTTAAGAAGCCATGGGTTAACGACTTGGAACTCACCG 5802 Query 75734 GACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 75793 | ||| || | || | |||||| || || ||||| || | | |||||||| || Sbjct 5801 GCCAACACACGGCGTGAGTAAATGTTGGAAGTGTATGGCTCGAAACATTCATTGAAACCG 5742 Query 75794 AAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 75853 | |||||||| || ||||| |||||||| || || | |||||||| | || |||| Sbjct 5741 AGAATTTGAGATGTGCTGGCAGTTGGCATAGGAGCAACAAGCAAACTATTCCGGATACCA 5682 Query 75854 TGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCC 75913 ||| |||| | || ||| | | ||||||||||||||| | || |||| || Sbjct 5681 TGTTGCTTGATAGATTGCTTGAGAGAATCCCAATCCCAAAGATCCGTAGGAGTAACACCC 5622 Query 75914 CAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTC 75973 || | ||| ||||| || || ||| | ||||| | ||||| ||||| | Sbjct 5621 CACATATCATATTGAAGCTCACCCTTGGAGACTGGAGATCCTTCATATGACTCGTATGGG 5562 Query 75974 CCG---TCCTTTTCAGCTAGTTCGCAAC---TCGCCTCTAACGCACCGTAATAAATTGTT 76027 || ||||| |||| || ||| | || || ||||||| || || || Sbjct 5561 CCTAATTCCTTG---GCTA--TCTGAACAGATGAAGTCAAA-GCACCGTGGTAGATGGTC 5508 Query 76028 TCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGA 76087 || || || | | || |||| | |||||| | ||| || || || | | | Sbjct 5507 TCAAAGATTTGGATGTTGAGATGCTTCGCTTCGGGTGAATCGAATGGTAAACGGAGAGCC 5448 Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147 | || ||||| || || || ||||| |||| | ||||||||| ||| | |||| Sbjct 5447 AAGAAGGCATCAGCAAGACCTTGAACACCAACAGCAATAGGTCGATGACGGAAATTGCTT 5388 Query 76148 ATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 76207 || |||||| | || || ||||| ||||| ||||| || || | ||||||||| Sbjct 5387 CTTCTGGCTTCTTCGACGGGATAGTAATTGATATCGATAATCTTGTTCAAGTTTCTGACA 5328 Query 76208 ACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATCA------CA 76261 || |||| ||| || || | || || | |||||| | |||| || || || Sbjct 5327 ACAACTTGAACGACCTCGTGAAGCTTTTGGAAATCATAAGTTCCCTCGGCCATGTTGACA 5268 Query 76262 AACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATAT 76321 || | ||||| ||||| || | |||||| || ||||||| || | ||| Sbjct 5267 AAGGTTGGGAGAGCAATAGAAGCCAAATTACAGCAAGCAACCTCATCAGGTGCAGAGTAT 5208 Query 76322 TGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTC 76381 | | || |||||||| | || | ||| || || ||||| | ||| |||||| Sbjct 5207 TCGACGATTTCCGTGCACAAGTTGGAGCTGCGGATTGTGCCGAGATTCTTTTGATTGCTC 5148 Query 76382 TTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCG 76441 |||||||| || | || || ||||| | || || |||| || ||| |||||| ||| Sbjct 5147 TTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCTGTCTCAGTCTGTGCCTCG 5088 Query 76442 ATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTTTCA 76501 | ||||| | ||| | | ||| || || | | || || | | ||| Sbjct 5087 AGGATAGAATACCAAAGCTTTTGAGCCTTGAT-----AGTCTTACGGCCTTTACCTTGTT 5033 Query 76502 TATTGTGT-----ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 | | || ||| | |||||| ||||| || | |||||| |||| ||||||| Sbjct 5032 TCTCGTAACCCTCATAAAGAGCTTCAAACTCATCACCATAGACATCAGCCAAGCCAGGAC 4973 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 |||| || || ||||| | || ||| || || | | | ||| || ||||| ||||||| Sbjct 4972 ATTCGTTGGGGCACATGAGTGTCCAATCTCCGTTCTTTTCAACACGCTTCATGAAGAGAT 4913 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCT 76676 | || ||||| || ||| ||| || || || | || | ||| || ||||| ||||| Sbjct 4912 CTGGAATCCAGAGGGCATAAAAGAGGTCGCGTGCTCGAACTTCCTCCTTTCCATGATTCT 4853 Query 76677 TTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAA 76736 || ||||| | ||||| | | ||| | |||||||||||| || || || || | Sbjct 4852 TTCGGAGATCCAAAAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAGATGGCGAATG 4793 Query 76737 CACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCA 76796 |||| || || || ||||| || ||||| | |||||| || || || || |||||| | Sbjct 4792 CACCAGGGCGCTTGTTACCACCTTGATCGACATATCTAGCGGTATTGTTGAAAACTCGAA 4733 Query 76797 ACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCAC 76856 ||| |||| || |||||||| | |||||||| |||| ||| || ||| |||| Sbjct 4732 GCATAGGAACGATACCGTTAGAATTTCCATTTGTGCCAGCAATGTATGCACCAGTAGCAC 4673 Query 76857 GAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTT 76916 |||| | || || || || ||||| || | ||||| || | ||||| | Sbjct 4672 GAATTCTGTGGATGTTGAGACCAATACCTCCAGCATTCTTAGAAATCATGGCACAAATCT 4613 Query 76917 TCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAG 76976 |||| || ||||| || || || |||||||| ||| |||||| || || || || || Sbjct 4612 TCAAAGTATCATAAATTCCATCAATACTATCCTCCTTCATGTCAATGAGGAAGCATGAAG 4553 Query 76977 ACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATT 77036 | | ||| || || || || || | ||| ||||| || || || || ||| Sbjct 4552 AAAGTTGGGCTTGTGGTGTACCCGCGGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATT 4493 Query 77037 TTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT-TCTATATC-CCATTGATGAATTCC 77094 | | || | || ||||| |||||||| | ||| || ||||| || | ||||| || Sbjct 4492 TGTTGGACATTAAGTTGTAGGTTTCAATGGC-GCTCTCGATATCATCACCG-TGAATACC 4435 Query 77095 TACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAA 77154 || || |||||||| | ||| || || || ||||| || || || | | Sbjct 4434 AACGGCAACACGCATAATCATTTGTTGTGGACGTTCAGCAACTTTTCCATCGAGGCGGAG 4375 Query 77155 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 77214 | ||||||| | || | ||| || || || || || | ||| ||||||| ||||| Sbjct 4374 GAGGTATGATCTCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTGAAGTCTCGATCGTA 4315 Query 77215 AATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGACAGTGGTAG- 77273 || ||| | || || |||| ||| || | | |||| | || ||| | | | Sbjct 4314 AACGATAGCAGAGTTAAGTTCTGCCTCATGTCTCATAAC-ACATTCATATGTTTCCTTGC 4256 Query 77274 AAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTA 77333 ||| || |||||| | | |||||||| | || |||| ||| ||| || | Sbjct 4255 TAATCATGGGAGATTTTGTACCATTTTTGGTGTTCGTGTAGTGGTATAGGTCACTGATGA 4196 Query 77334 CGTCGCTA-AATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCT 77392 | | || | ||| |||| || |||| |||||| ||||| || || || || | ||||||| Sbjct 4195 CAT-GCGAGAATTGTTTCTTGGTTTGCTTGTGGAGATTGGAAACTGCAATACGAGCAGCT 4137 Query 77393 AGAATTGCATAGTCAGGATG 77412 | || ||||| || ||||| Sbjct 4136 AAGATGGCATAATCGGGATG 4117 >seq10338 Length=29807 Score = 141 bits (156), Expect = 1e-28 Identities = 579/919 (63%), Gaps = 64/919 (7%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 || |||||| || || ||||| ||| | ||||| |||||||| || || || ||||| Sbjct 13451 TGCCATAACACCAGCCTTCTGGTAATCAGCAACACGCTTCTCGAAGAAGTTGGTCTTGCC 13392 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 | | || || |||||||| || || || || || || | |||| |||| | Sbjct 13391 AGCGAGAGAAATGTTTTCCATGAAGTCGAATGGGTTGGTGGAACGGTAAACCTTTTCATT 13332 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502 || | | || || | ||||| ||||| || || || |||||||| || | Sbjct 13331 ACCAAGGGCAAGAAGAAGACGGTCTGCGACGAACTCAATGTATTGTTTCATCAGATCCGA 13272 Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGAC 46562 ||||| || | ||| || ||||| || || | || || || ||||| || || Sbjct 13271 GTTCATGCCAAGGAGAGCACATGGAAGAGCTTCGGTCAAGAATTCCTGCTCAATTGTAAC 13212 Query 46563 AGCATCCGATATTATCGATGTT--ACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTA 46620 ||| || | || | || | || | || | |||||| ||||| |||| || Sbjct 13211 AGCCTCTGTGATGAC--ATCCTGAACGGCTTGTTTACTTGGGCGATGCTTCAAGTGCGAG 13154 Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 || | | || || || || |||||| || || || | || | ||||| || Sbjct 13153 AAGAGAAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAG 13094 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || || || || | ||| | |||||||| |||||||| || |||| ||||| || ||| Sbjct 13093 AAAGTAAGACCGGCCATCAAACCACGCTTCTTGAGCCAGAAGATAGAGGCGAATGAACCA 13034 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCA 46800 ||||| || ||||| ||||| ||||||||||| || | | | | | | || Sbjct 13033 CTGAAGAAGATACCTTCAACAGCAGCGAATGCGACGAGACGTTGAGCAAATGTAGATTCT 12974 Query 46801 TT---ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTT--TAC-------------- 46841 || || ||||| || ||||||||| ||||| ||||| ||| Sbjct 12973 TTGTCTTGGATCCATCTAACAGCCCAATCGGCCTTCTTCTTAATACAAGGGACTGTGTAA 12914 Query 46842 -----ACAAGGCATT-------------------------------GTTTCTATAGCATT 46865 | |||||||| ||||| |||||||| Sbjct 12913 TGATTAGAAGGCATTCATACTTGTGATAAATGCATATAACTCACTGGTTTCAATAGCATT 12854 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 |||||| | || | | | || || | |||||||| || | |||| || | Sbjct 12853 GAAGAGATATGTTCGCTGAGCTTGTTCCTTGATGTATGTATCGATGAGAAGAGAGTATGT 12794 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 ||| || |||||||| || || ||||| || ||||| || |||| |||||||| || Sbjct 12793 TTCCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGTGCTTCAGGGAT 12734 Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCAG 47044 ||| ||||| || || ||||| ||||| |||||||| || ||||||||| || | Sbjct 12733 CTGGACCTCACCACTGAAACGTTC-GACAAGGTTCTCATTGACAATTCCATCAGATGCGG 12675 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGT---TTATTCC 47101 | || ||||| | || || | || || |||||| | | ||| || |||| Sbjct 12674 CGAAGAATGCGAGGACGTGAGAGACGAAGTAACGCTCATCGTCATTGAGTCTGTTGTTCC 12615 Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161 |||| | | ||| ||||| | || | ||||| || |||||||| || ||||| || | Sbjct 12614 AGTCGTGAAGATCCTTTGACAAGTCGATCTCTTCTGCGGTCCAGAAAGATGCCTCAGCCT 12555 Query 47162 TTTTATACATATTCCATAT 47180 | || ||||| | ||| || Sbjct 12554 TCTTGTACATCTGCCAAAT 12536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712829447144640