Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq655 109 1e-18 seq10763 105 2e-17 seq10174 98.7 2e-15 >seq655 Length=7676 Score = 109 bits (120), Expect = 1e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||||||| || | ||| ||||| || || |||||||||||||| |||| | || | Sbjct 3708 AGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGG 3767 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || |||||||| | | ||||| || | | ||| || ||| Sbjct 3768 CCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGGGATACCCTCC 3827 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || || || | || | |||| ||| || || |||||||| Sbjct 3828 TTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAACCTCAAGAGTG 3887 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 ||||| || || || |||||||| |||| Sbjct 3888 ATAGTCTTTCCGGTAAGAGTCTTGACGA 3915 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| | ||| || || ||||||||||||||||||| ||| || | ||||| Sbjct 3486 AGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCC 3545 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || ||||| || || | ||||| || | | ||| || ||||| ||| Sbjct 3546 TCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTATCT 3605 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | | || || ||| || || | || || || Sbjct 3606 TGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTC 3665 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||||| |||||| Sbjct 3666 TTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| ||||||||||| || ||||||||||| |||| | || | ||||| Sbjct 3998 GAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATC 4057 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| | | ||| ||||| | | ||| || ||||| || Sbjct 4058 CTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGGATACCCTCCTTATC 4117 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || |||||| | || | |||| ||| || || ||||| || || || Sbjct 4118 CTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGT 4177 Query 152072 TTTGCCCGT 152080 ||||| || Sbjct 4178 CTTGCCGGT 4186 >seq10763 Length=10051 Score = 105 bits (116), Expect = 2e-17 Identities = 195/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 115629 TTCTATGCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGG 115688 || |||||| | |||| | ||||| || |||||||| || | |||||| ||| Sbjct 4891 TTTTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACGGAGATTGG 4950 Query 115689 AGCCTCTTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAG 115748 | ||| | || ||||| ||| ||||| | | |||||| |||||| |||||||| Sbjct 4951 ACACTCATGTGCCCCAACGAATGTCCTGGCTTGGCTGATGTCTATGGTGATGAGTTTGAA 5010 Query 115749 AATCTTTACGAAAGGTACGAGAAAGAGGGAAGAGCCAAAAGGGTTGTGAAGGCGCAAGAC 115808 |||||| || | ||||||||| | || | || | | | | | ||||| ||| | Sbjct 5011 GCTCTTTATGAGGGTTACGAGAAACAAGGTAAAGGCCGTAAGACTATCAAGGCTCAAAAG 5070 Query 115809 CTTTGGCATCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGT-ACAA 115867 |||||| || |||||| | ||||| | ||| |||| |||||| ||| | |||| Sbjct 5071 CTTTGGTATTCTATCCTCGAGGCACAGACTGAGACAGGAAA-CCCTTTCATGCTTTACAA 5129 Query 115868 AGATGCAGTTTG---TCGAAAGAGCAATCAAAAGAATTTCGG 115906 |||||| ||| ||||||||||||||||||| |||| Sbjct 5130 AGATGC---TTGCAACAAAAAGAGCAATCAAAAGAATCTCGG 5168 >seq10174 Length=26070 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974 ||||||||||| ||||||| || ||| | |||||||| || ||||| |||||||||| Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTT--CCGGCGAAGA 24562 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | || ||||||| | ||||| ||||| |||||||| || |||||| | | Sbjct 24563 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGT 24622 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | |||| || || || ||||| || || || || ||||| | ||||| |||| Sbjct 24623 CGATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGA 24682 Query 152095 AG 152096 || Sbjct 24683 AG 24684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153646696734367