Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq655 206 6e-48 seq10174 170 4e-37 seq9962 113 9e-20 seq10741 98.7 2e-15 seq10338 95.1 3e-14 seq2135 95.1 3e-14 >seq655 Length=7676 Score = 206 bits (228), Expect = 6e-48 Identities = 183/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| |||||| ||||| || ||||||||||| || || | Sbjct 3242 ACCACCACGGAGACGAAGCACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGA 3301 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | || ||||| | ||| || ||||||||||||||||||||||| || || Sbjct 3302 AAGAGTTCTACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGG 3361 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||||||||||||||||| |||||| |||| || || || || | ||| || Sbjct 3362 AATACCTTCCTTGTCTTGGATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCAC 3421 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| | || || ||||| || |||||||||||||| || || |||||| Sbjct 3422 TTCCAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3470 Score = 194 bits (214), Expect = 4e-44 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | || |||| ||| | || ||| ||||||||||||||||| | Sbjct 3698 ACCACCACGAAGTCTGAGAACCAAATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGA 3757 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||||||||| || |||||||| || || |||||||||||||| || ||| || Sbjct 3758 AAGTGTGCGGCCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGCTGATCAGGAGG 3817 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| ||||| ||||| | || ||| | |||||||||||||||| ||| || Sbjct 3818 GATACCCTCCTTATCTTGAATCTTAGTCTTAACGTTGTCGATAGTGTCCGAAGATTCAAC 3877 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093 || |||||||| ||||| || || | |||||| |||| ||| Sbjct 3878 CTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGACTAT 3919 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || ||||| | || || || |||||||||||||| | Sbjct 3983 ACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 4042 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| ||||| || || |||||||||||||| ||||||||| || Sbjct 4043 AAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGG 4102 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || || ||||| | || || | ||||||||||| |||| ||| || Sbjct 4103 GATACCCTCCTTATCCTGAATCTTGGTCTTGACATTGTCGATAGTGTCGGAAGATTCAAC 4162 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| || || Sbjct 4163 CTCAAGGGTGATGGTCTTGCCGGT 4186 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || |||||||||| |||||| || ||| |||||||||||||| || | Sbjct 3471 CCACCACGAAGACGAAGTACCAAATGTAAAGTCGATTCCTTTTGGATGTTGTAATCGGAT 3530 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||||||||||| | || || || || || || | |||||| || ||| || Sbjct 3531 AAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAAATGAGACGTTGCTGATCAGGTGGG 3590 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| ||||| ||||| | || || ||||||| || || || | ||||| Sbjct 3591 ATGCCCTCCTTATCTTGAATCTTAGTCTTCACATTATCGATGGTATCAGACGACTCGACC 3650 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 3651 TCTAATGTGATTGTCTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 3697 >seq10174 Length=26070 Score = 170 bits (188), Expect = 4e-37 Identities = 145/179 (81%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||| || || | || ||||| ||||| || ||||| || ||||| |||||| Sbjct 24505 TTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGATC 24564 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 |||||||||||||| ||||| |||||||||||||| ||||| | || || | ||| Sbjct 24565 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 24624 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 |||||||| || | |||||| || || ||||| |||||||||||||| ||||| ||||| Sbjct 24625 ATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 24683 >seq9962 Length=55051 Score = 113 bits (124), Expect = 9e-20 Identities = 138/187 (74%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTG 282955 |||||| ||||| || ||||||| || || || | ||| | | |||||||| | | Sbjct 10921 ATGTAAGGTGCTCTCCTTTTGGAAATTATAATCTGAAAGAATTCTACCATCCTCCAATAC 10980 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 ||||| | |||| ||||| ||||||||||| |||||| | ||||||||||||||||| Sbjct 10981 TTTCCTG-CAAATATCAATCGTTGTTGGTCGGGTGGAATATCTTCCTTGTCTTGGATCTT 11039 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || | || |||| || || || || | ||| ||||| | || || ||||| || || Sbjct 11040 TGTCTGGACATTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTCTTTCCAGT 11099 Query 283076 CAAAGTC 283082 ||| ||| Sbjct 11100 CAAGGTC 11106 >seq10741 Length=20049 Score = 98.7 bits (108), Expect = 2e-15 Identities = 231/339 (68%), Gaps = 10/339 (3%) Strand=Plus/Plus Query 274462 CTGGAATTTCTAGCAGACTGGGGAAACAACTATGGAAAAAGTTCATGACAAGACC--TGA 274519 |||| | || |||| ||||||||| | |||| ||| || || | ||| || ||| Sbjct 11004 CTGGCAGTTTGAGCAAACTGGGGAATTGAACCTGGAGAAAATTGATCAAAAGTCCCTTGA 11063 Query 274520 TATGTGAGTTCCGTCAACGTCGGCATCTGTCATGATCATAACATGTCCATACCGAAGCGA 274579 |||| | | ||||| || ||| | ||||||||| | ||| ||||| || || Sbjct 11064 TATG--ACTACCGTCGTGATCTTGATCGGCCATGATCATGAGATGACCATAACGTAGACT 11121 Query 274580 GGAAGTATCTTTATACAACTTCCCTGT-TTGAAGCCCAAGAATTTGCTTGAGAGCGGTG- 274637 ||||||||||||| | || ||| || ||| || || ||||| |||| || || Sbjct 11122 TTGTGTATCTTTATACA-CAGCCTTGTGTTTAAGTCCTAGGATTTGTTTGAT-GCTCTGG 11179 Query 274638 ATTTCTTCGTTCTTTGTGATACTCGCC-ACAGAAGCATCACGTACGTTCAGCAACTTACC 274696 || || ||||||| || || || | | | ||||||||||| ||||| |||| ||| || Sbjct 11180 ATCTCAGCGTTCTTGGTTAT-CTGGTCGATCGAAGCATCACGAACGTTGAGCATCTTTCC 11238 Query 274697 GCGGAGAGGGAAAACGCCATACCTTTCGCGCCCGATGACCGAAAGACCGGCGATCGCGAG 274756 || ||||| || || ||| || || | | | |||| |||| || | ||| || Sbjct 11239 ACGTAGAGGAAAGACTCCAATTCTGTCAGGATCAAGAACCGCTCGACCAGCAACCGCAAG 11298 Query 274757 AGTTGCTGCTGAATCTCCCTCTGTGAGAATCAAAGTACA 274795 | | ||| |||||||| || || ||||| || || || Sbjct 11299 ACCTTTTGCGGAATCTCCTTCGGTAAGAATTAAGGTGCA 11337 >seq10338 Length=29807 Score = 95.1 bits (104), Expect = 3e-14 Identities = 169/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 230164 TCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTC 230223 || ||||||| | ||| ||| ||| |||| ||| | ||| ||| |||| || || Sbjct 13198 TCATCACAGAGGCTGTTACAATTGAGCAGGAATTCTTGACCGAAGCTCTTCCATGTGCTC 13257 Query 230224 TTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTT 230283 | | |||||||| | ||||| ||| ||||| || || ||||| || || ||| || Sbjct 13258 TCCTTGGCATGAACTCGGATCTGATGAAACAATACATTGAGTTCGTCGCAGACCGTCTTC 13317 Query 230284 TCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGC 230343 | | || || || | || || || || |||| ||||| |||| || ||||| Sbjct 13318 TTCTTGCCCTTGGTAATGAAAAGGTTTACCGTTCCACCAACCCATTCGACTTCATGGAAA 13377 Query 230344 TCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGC 230403 |||||| ||| || || || ||||||||||| |||||||| ||||| || | | Sbjct 13378 ACATTTCTCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCTGATTACCAGAAGG 13437 Query 230404 CCGGTGT 230410 | ||||| Sbjct 13438 CTGGTGT 13444 >seq2135 Length=2596 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || |||||||| || |||||||| | ||| || | ||||||||||| || | ||| Sbjct 1 GGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTGTCGATAGTGTCGGAGGATTCA 60 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || |||||||| | ||||| ||||| |||||||| Sbjct 61 ACCTCGAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046581254578158