Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq655 134 1e-26 seq10174 102 6e-17 >seq655 Length=7676 Score = 134 bits (148), Expect = 1e-26 Identities = 158/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCG 44185 ||||| || | |||||||||||||||||||| ||||| | ||||| | |||| Sbjct 3260 CACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTT--CTACCGTCC 3317 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| ||||| ||||||||||||||||| || ||||| | || | ||||||||| || Sbjct 3318 TCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCT 3377 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| | | | ||||| || | |||||||| |||| |||||| ||| Sbjct 3378 TGGATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTC 3437 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | ||||| || ||||||||||| Sbjct 3438 TTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3469 Score = 105 bits (116), Expect = 5e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||||||||| |||| ||| ||| | || || || || || || || ||| Sbjct 3735 TCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCTTCGAGTTGTTTACCAGCGAAG 3794 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| |||||||| | ||| | ||| ||||| || ||||| ||| || ||| Sbjct 3795 ATCAAACGTTGCTGATCAGGAGGGATACCCTCCTTATCTTGAATCTTAGTCTT-AACGTT 3853 Query 44267 -CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||||| ||||| | || || |||||||| || || ||||| || Sbjct 3854 GTCGATAGTGTCCGAAGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGAC 3913 Query 44326 GA 44327 || Sbjct 3914 GA 3915 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||||||||||||||||| | ||| | || |||| |||||| || || || Sbjct 3507 TCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAA 3566 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||| |||||||| | || | || ||||| || ||||| ||||| | Sbjct 3567 ATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTATCTTGAATCTTAGTCTTCACATTA 3626 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | ||||| || | || || ||||| | || || |||||||| || |||||||| ||| Sbjct 3627 TCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTCTTTCCAGTAAGGGTCTTGACG 3686 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 3687 AAGATCTGCAT 3697 Score = 95.1 bits (104), Expect = 9e-15 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| |||| || ||| | || || || ||||| || ||||| Sbjct 4019 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 4078 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263 |||||||||||| || || | ||| | ||| ||||| ||| ||||| ||| || | Sbjct 4079 GATCAAACGCTGTTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTGGTCTTGACATT 4138 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 || | || ||||||| ||||| ||||| | || || ||||| || || Sbjct 4139 GT--CGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGT 4186 >seq10174 Length=26070 Score = 102 bits (112), Expect = 6e-17 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||||||||| ||||||| || ||| | || || || ||||| ||||| |||| Sbjct 24503 CCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGA 24562 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||||||| || || || | || | || ||||| || ||||| ||| || ||| Sbjct 24563 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGT 24622 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| |||||| ||||| | || || ||||| ||||| | |||||| || Sbjct 24623 --CGATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGAC 24680 Query 44326 GAAG 44329 |||| Sbjct 24681 GAAG 24684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359938729790409