Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq655 134 1e-26
seq10174 102 6e-17
>seq655
Length=7676
Score = 134 bits (148), Expect = 1e-26
Identities = 158/212 (75%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCG 44185
||||| || | |||||||||||||||||||| ||||| | ||||| | ||||
Sbjct 3260 CACCAAATGTAAAGTGCTCTCCTTTTGGATGTTATAATCCGAAAGAGTT--CTACCGTCC 3317
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|||| ||||| ||||||||||||||||| || ||||| | || | ||||||||| ||
Sbjct 3318 TCCAATTGCTTTCCGGCAAAGATCAAACGTTGTTGATCGGGTGGAATACCTTCCTTGTCT 3377
Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| | | | ||||| || | |||||||| |||| |||||| |||
Sbjct 3378 TGGATCTTTGTCTTTACGTTATCAATGGTATCTGACGATTCCACTTCCAACGTAATTGTC 3437
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || | ||||| || |||||||||||
Sbjct 3438 TTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3469
Score = 105 bits (116), Expect = 5e-18
Identities = 134/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||||||||||||||| |||| ||| ||| | || || || || || || || |||
Sbjct 3735 TCCTTTTGGATGTTGTAGTCGGAAAGTGTGCGGCCATCTTCGAGTTGTTTACCAGCGAAG 3794
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|||||||| |||||||| | ||| | ||| ||||| || ||||| ||| || |||
Sbjct 3795 ATCAAACGTTGCTGATCAGGAGGGATACCCTCCTTATCTTGAATCTTAGTCTT-AACGTT 3853
Query 44267 -CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||||| ||||| | || || |||||||| || || ||||| ||
Sbjct 3854 GTCGATAGTGTCCGAAGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGAC 3913
Query 44326 GA 44327
||
Sbjct 3914 GA 3915
Score = 102 bits (112), Expect = 6e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
|||||||||||||||||||||| | ||| | || |||| |||||| || || ||
Sbjct 3507 TCCTTTTGGATGTTGTAATCGGATAAGGTGCGGCCATCCTCCAACTGCTTACCAGCGAAA 3566
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|| | ||| |||||||| | || | || ||||| || ||||| ||||| |
Sbjct 3567 ATGAGACGTTGCTGATCAGGTGGGATGCCCTCCTTATCTTGAATCTTAGTCTTCACATTA 3626
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
| ||||| || | || || ||||| | || || |||||||| || |||||||| |||
Sbjct 3627 TCGATGGTATCAGACGACTCGACCTCTAATGTGATTGTCTTTCCAGTAAGGGTCTTGACG 3686
Query 44327 AAGATTTGCAT 44337
||||| |||||
Sbjct 3687 AAGATCTGCAT 3697
Score = 95.1 bits (104), Expect = 9e-15
Identities = 124/170 (73%), Gaps = 4/170 (2%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
|||||| ||||||||||| |||| || ||| | || || || ||||| || |||||
Sbjct 4019 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 4078
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAAT 44263
|||||||||||| || || | ||| | ||| ||||| ||| ||||| ||| || |
Sbjct 4079 GATCAAACGCTGTTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTGGTCTTGACATT 4138
Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313
|| | || ||||||| ||||| ||||| | || || ||||| || ||
Sbjct 4139 GT--CGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGT 4186
>seq10174
Length=26070
Score = 102 bits (112), Expect = 6e-17
Identities = 134/184 (73%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
||||||||||||| ||||||| || ||| | || || || ||||| ||||| ||||
Sbjct 24503 CCTTTTGGATGTTATAATCGGATAGAGTGCGTCCATCTTCAAGTTGCTTTCCGGCGAAGA 24562
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||||||| || || || | || | || ||||| || ||||| ||| || |||
Sbjct 24563 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGT 24622
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||||| |||||| ||||| | || || ||||| ||||| | |||||| ||
Sbjct 24623 --CGATAGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGAC 24680
Query 44326 GAAG 44329
||||
Sbjct 24681 GAAG 24684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359938729790409
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |