Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31]
11,777 sequences; 51,994,176 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq10174 154 4e-32
seq655 154 4e-32
seq2135 95.1 3e-14
>seq10174
Length=26070
Score = 154 bits (170), Expect = 4e-32
Identities = 147/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || | || || || || |||||||| ||||| ||| ||| ||||| |||
Sbjct 24683 TTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGACACTATC 24624
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| |||||||| ||||| || ||||| || |||||||| ||||| |
Sbjct 24623 GACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTG 24564
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109
|||||||||||||| || || ||||||||| | ||||| ||||||||||| |||||||
Sbjct 24563 ATCTTCGCCGGAAAGCAACTTGAAGATGGACGCACTCTATCCGATTATAACATCCAAAAG 24504
Query 178110 GAATCAAC 178117
| || |||
Sbjct 24503 GTATGAAC 24496
>seq655
Length=7676
Score = 154 bits (170), Expect = 4e-32
Identities = 159/208 (76%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || ||||| || ||||| || ||||| || ||||| ||| || ||||| ||||
Sbjct 3915 TCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCG 3856
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| ||||| || |||||||| || || || || |||||||| || |||||||| | |
Sbjct 3855 ACAACGTTAAGACTAAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGA 3796
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
||||||| || ||||| ||||||||||| | || ||| |||| || ||| ||||||| |
Sbjct 3795 TCTTCGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAGG 3736
Query 178111 AATCAACACTGCATCTTGTTTTGAGACT 178138
|||| || || ||| | ||| | |||||
Sbjct 3735 AATCGACTCTCCATTTGGTTCTCAGACT 3708
Score = 113 bits (124), Expect = 1e-19
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || |||||||| ||||| ||| || ||||| ||||| || |||||
Sbjct 4186 ACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAATGTCAAGACC 4127
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||||||||| || || || |||||||| ||||| || || | ||||| || || ||
Sbjct 4126 AAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAACAGCGTTTGATCTTTGCTGGCAAG 4067
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| || || ||||| | || ||| |||| || ||| |||| || || || || || |||
Sbjct 4066 CAACTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAT 4007
Query 178125 CTTGT 178129
|| ||
Sbjct 4006 CTCGT 4002
>seq2135
Length=2596
Score = 95.1 bits (104), Expect = 3e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || ||||| |||||||||||||| ||| ||| |||
Sbjct 107 CAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCCGAC 48
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030
|| ||||| || |||||| ||||| ||||| || || ||||||||
Sbjct 47 ACTATCGACAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203549565613738
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |