Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20sydowiana_20[genbank_20GCA_5F000812895.1_202014-12-31] 11,777 sequences; 51,994,176 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10174 154 4e-32 seq655 154 4e-32 seq2135 95.1 3e-14 >seq10174 Length=26070 Score = 154 bits (170), Expect = 4e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || | || || || || |||||||| ||||| ||| ||| ||||| ||| Sbjct 24683 TTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCGACACTATC 24624 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| |||||||| ||||| || ||||| || |||||||| ||||| | Sbjct 24623 GACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTG 24564 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 |||||||||||||| || || ||||||||| | ||||| ||||||||||| ||||||| Sbjct 24563 ATCTTCGCCGGAAAGCAACTTGAAGATGGACGCACTCTATCCGATTATAACATCCAAAAG 24504 Query 178110 GAATCAAC 178117 | || ||| Sbjct 24503 GTATGAAC 24496 >seq655 Length=7676 Score = 154 bits (170), Expect = 4e-32 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || ||||| || ||||| || ||||| || ||||| ||| || ||||| |||| Sbjct 3915 TCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCTTCGGACACTATCG 3856 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||| || |||||||| || || || || |||||||| || |||||||| | | Sbjct 3855 ACAACGTTAAGACTAAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAGCAACGTTTGA 3796 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || ||||| ||||||||||| | || ||| |||| || ||| ||||||| | Sbjct 3795 TCTTCGCTGGTAAACAACTCGAAGATGGCCGCACACTTTCCGACTACAACATCCAAAAGG 3736 Query 178111 AATCAACACTGCATCTTGTTTTGAGACT 178138 |||| || || ||| | ||| | ||||| Sbjct 3735 AATCGACTCTCCATTTGGTTCTCAGACT 3708 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||| ||||| ||| || ||||| ||||| || ||||| Sbjct 4186 ACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAATGTCAAGACC 4127 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||||||||| || || || |||||||| ||||| || || | ||||| || || || Sbjct 4126 AAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAACAGCGTTTGATCTTTGCTGGCAAG 4067 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || ||||| | || ||| |||| || ||| |||| || || || || || ||| Sbjct 4066 CAACTTGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACTCTCCAT 4007 Query 178125 CTTGT 178129 || || Sbjct 4006 CTCGT 4002 >seq2135 Length=2596 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| |||||||||||||| ||| ||| ||| Sbjct 107 CAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCCGAC 48 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030 || ||||| || |||||| ||||| ||||| || || |||||||| Sbjct 47 ACTATCGACAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203549565613738