Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5020 107 2e-18 >seq5020 Length=23815 Score = 107 bits (118), Expect = 2e-18 Identities = 198/290 (68%), Gaps = 9/290 (3%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || ||||| || || ||| | |||||||| ||||||||||| ||||| Sbjct 18352 ATGTATGTGTCGATCAGGAGAGAGTATGTCTCGGAGTGAATGTTCTCCATCATAATCTGG 18293 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||||| || || || | | ||| ||||| || ||| || || | || Sbjct 18292 AAACCGTAGAAGCAGCGAGCCTCAGGGACTTGCACTTCGGCGCTGAAGCGCTCAACCAGG 18233 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||| ||||||||||| || ||||| || ||||| || || ||||| || Sbjct 18232 TTCTCGTTGACGATGCCGTCAGAGGCAGCGAAGAAAGCCAAGATGTGAGAGATGAAGTAC 18173 Query 17414 TTTTCGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACT 17467 || ||||| | || ||| |||||| | | ||||||||| | ||| | | Sbjct 18172 TTCTCGTCATCGTTCAG---GCGGTTGTTCCAGTCGTGAAGATCTTTGGAGAGATCGATT 18116 Query 17468 TCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 || |||| ||||| ||| ||| | ||||| || ||||| | ||| || Sbjct 18115 TCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGAT 18066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517507715662080