Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3618 208 9e-49 seq5020 89.7 6e-13 >seq3618 Length=19201 Score = 208 bits (230), Expect = 9e-49 Identities = 798/1235 (65%), Gaps = 46/1235 (4%) Strand=Plus/Plus Query 53437 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCT 53496 ||| ||| ||| ||||| || || ||||||| ||| || || || | || || |||| Sbjct 1360 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 1418 Query 53497 A-TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 53554 | || || || ||| |||| || || ||||| || | ||||||||||| | |||| Sbjct 1419 ACTCGAAAGGC-AATCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCG 1477 Query 53555 ATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 53614 || || | || | | | || | | || || || | |||||| | || | ||| Sbjct 1478 ATGGGCCGGTGACGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCG 1537 Query 53615 ATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA 53674 ||||| || ||||| || | || | |||| | || || | ||| || || || Sbjct 1538 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCG 1597 Query 53675 AATTGTCCATC----TATTACAAACATGTT--CAATGCAATAGATGCCAGATTACAAACG 53728 || | |||| || | | | | | || || | ||| || || || ||||| Sbjct 1598 AAGCATGCATCATCGTAGTTGATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAAACA 1657 Query 53729 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 53788 || ||||| | || | | | ||| | || |||||||||||||| || | ||| Sbjct 1658 GCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGGATT 1717 Query 53789 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGC 53848 || || | || | || || ||||| ||| || || ||||| || || |||||||| Sbjct 1718 GTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAATGGA 1777 Query 53849 GTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA 53908 ||||||| ||| |||| | || | |||| | ||| | ||||||| || | Sbjct 1778 TTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTTTGAGCCTTGATGGTG 1837 Query 53909 GATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCC 53965 ||| | ||| || || ||||| |||||| ||||| || ||| | Sbjct 1838 CGCTTG---CCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTCAC 1892 Query 53966 CAAA-CATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 54023 || | || | ||| ||||| || |||| |||||||| | | |||||| || | | Sbjct 1893 CATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCATTTT 1952 Query 54024 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 54083 || || || ||||| |||||||| |||||||||||||| | || ||||| | || | Sbjct 1953 TCTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGGGCAC 2012 Query 54084 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143 | ||||| || || ||||| |||||||||||| | | | || || |||| Sbjct 2013 GAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAGTGCC 2072 Query 54144 ACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 54203 | ||||| | ||| |||| | | ||||| || || || || || || || | ||| | Sbjct 2073 AGGGTTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTGCCACCTTGGTCAACGTAGC 2132 Query 54204 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCC 54263 || ||||| || | || | | ||| || | || |||||||| | || ||||| | Sbjct 2133 GGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTGGTGC 2192 Query 54264 CGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGC 54321 ||| || || ||| | || ||||| | |||| || || || || || || Sbjct 2193 CGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCACCAGC 2250 Query 54322 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 54381 |||||| ||||| | ||||| || | ||| ||||||||||| || || || ||||| Sbjct 2251 CATTTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGTCATC 2310 Query 54382 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCATTAAA 54438 |||||| | |||| ||| |||| | | ||| || || || ||||| || Sbjct 2311 TTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCATTGAA 2367 Query 54439 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498 | || || || ||||| || || | || || | || ||||| ||||| ||| | Sbjct 2368 GAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAATAAC 2427 Query 54499 TGAGTCTATAT------CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 54552 || |||| |||| |||| || || ||||| ||||| | ||||||||| Sbjct 2428 GCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGTGCTG 2481 Query 54553 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAA 54612 || | ||||| |||||| ||| | || |||| ||| ||| |||| || || || Sbjct 2482 TGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCTTGAA 2541 Query 54613 ACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 54645 ||||| || | ||| ||||| || || ||||| Sbjct 2542 GCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2574 >seq5020 Length=23815 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/195 (70%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| |||||||| || | | || | |||||||| || ||||| || ||||| ||||| Sbjct 18660 GTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGGCC 18601 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 |||||| || ||||| || ||||| || || | || |||||||| || || || || Sbjct 18600 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAAATACCCTCAACAGC 18541 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGC 24325 || ||||||| || | | || | | | ||||| |||||||| |||| Sbjct 18540 AGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGCAATCCACTTGAGAGC 18481 Query 24326 CCAATCGGCCTTCTT 24340 ||| ||||||||||| Sbjct 18480 CCAGTCGGCCTTCTT 18466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593678139578880