Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01]
5,856 sequences; 32,778,109 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq3618 208 9e-49
seq5020 89.7 6e-13
>seq3618
Length=19201
Score = 208 bits (230), Expect = 9e-49
Identities = 798/1235 (65%), Gaps = 46/1235 (4%)
Strand=Plus/Plus
Query 53437 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCT 53496
||| ||| ||| ||||| || || ||||||| ||| || || || | || || ||||
Sbjct 1360 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 1418
Query 53497 A-TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 53554
| || || || ||| |||| || || ||||| || | ||||||||||| | ||||
Sbjct 1419 ACTCGAAAGGC-AATCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCG 1477
Query 53555 ATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 53614
|| || | || | | | || | | || || || | |||||| | || | |||
Sbjct 1478 ATGGGCCGGTGACGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCG 1537
Query 53615 ATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA 53674
||||| || ||||| || | || | |||| | || || | ||| || || ||
Sbjct 1538 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCG 1597
Query 53675 AATTGTCCATC----TATTACAAACATGTT--CAATGCAATAGATGCCAGATTACAAACG 53728
|| | |||| || | | | | | || || | ||| || || || |||||
Sbjct 1598 AAGCATGCATCATCGTAGTTGATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAAACA 1657
Query 53729 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 53788
|| ||||| | || | | | ||| | || |||||||||||||| || | |||
Sbjct 1658 GCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGGATT 1717
Query 53789 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGC 53848
|| || | || | || || ||||| ||| || || ||||| || || ||||||||
Sbjct 1718 GTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAATGGA 1777
Query 53849 GTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA 53908
||||||| ||| |||| | || | |||| | ||| | ||||||| || |
Sbjct 1778 TTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTTTGAGCCTTGATGGTG 1837
Query 53909 GATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCC 53965
||| | ||| || || ||||| |||||| ||||| || ||| |
Sbjct 1838 CGCTTG---CCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTCAC 1892
Query 53966 CAAA-CATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 54023
|| | || | ||| ||||| || |||| |||||||| | | |||||| || | |
Sbjct 1893 CATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCATTTT 1952
Query 54024 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 54083
|| || || ||||| |||||||| |||||||||||||| | || ||||| | || |
Sbjct 1953 TCTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGGGCAC 2012
Query 54084 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143
| ||||| || || ||||| |||||||||||| | | | || || ||||
Sbjct 2013 GAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAGTGCC 2072
Query 54144 ACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 54203
| ||||| | ||| |||| | | ||||| || || || || || || || | ||| |
Sbjct 2073 AGGGTTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTGCCACCTTGGTCAACGTAGC 2132
Query 54204 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCC 54263
|| ||||| || | || | | ||| || | || |||||||| | || ||||| |
Sbjct 2133 GGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTGGTGC 2192
Query 54264 CGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGC 54321
||| || || ||| | || ||||| | |||| || || || || || ||
Sbjct 2193 CGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCACCAGC 2250
Query 54322 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 54381
|||||| ||||| | ||||| || | ||| ||||||||||| || || || |||||
Sbjct 2251 CATTTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGTCATC 2310
Query 54382 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCATTAAA 54438
|||||| | |||| ||| |||| | | ||| || || || ||||| ||
Sbjct 2311 TTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCATTGAA 2367
Query 54439 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498
| || || || ||||| || || | || || | || ||||| ||||| ||| |
Sbjct 2368 GAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAATAAC 2427
Query 54499 TGAGTCTATAT------CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 54552
|| |||| |||| |||| || || ||||| ||||| | |||||||||
Sbjct 2428 GCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGTGCTG 2481
Query 54553 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAA 54612
|| | ||||| |||||| ||| | || |||| ||| ||| |||| || || ||
Sbjct 2482 TGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCTTGAA 2541
Query 54613 ACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 54645
||||| || | ||| ||||| || || |||||
Sbjct 2542 GCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2574
>seq5020
Length=23815
Score = 89.7 bits (98), Expect = 6e-13
Identities = 137/195 (70%), Gaps = 3/195 (2%)
Strand=Plus/Minus
Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208
||| |||||||| || | | || | |||||||| || ||||| || ||||| |||||
Sbjct 18660 GTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGGCC 18601
Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268
|||||| || ||||| || ||||| || || | || |||||||| || || || ||
Sbjct 18600 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAAATACCCTCAACAGC 18541
Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGC 24325
|| ||||||| || | | || | | | ||||| |||||||| ||||
Sbjct 18540 AGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGCAATCCACTTGAGAGC 18481
Query 24326 CCAATCGGCCTTCTT 24340
||| |||||||||||
Sbjct 18480 CCAGTCGGCCTTCTT 18466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593678139578880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |