Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3611 104 2e-17 seq3571 87.8 2e-12 >seq3611 Length=65567 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||| |||||| || ||||||||||| | Sbjct 3055 CCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTC 3114 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||| ||| ||||| || | || || | ||| || ||| ||| Sbjct 3115 AGAGTGCGACCATCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 3174 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | | | || || | || ||| Sbjct 3175 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCAATGGTGTCGCTGGACTCGACC 3234 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | ||| |||||||| || ||||| Sbjct 3235 TCCAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 3281 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| |||||||| || ||||| ||||| | || || | | ||||| ||||| || || Sbjct 3540 AGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCAAGCTGCTTACC 3599 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || | || || | ||| || ||| ||| | ||| ||||| || |||||| || Sbjct 3600 AGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCCTGAATCTTTGACTT 3659 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | ||| ||| ||| | ||| || | || |||||||||||||| || || Sbjct 3660 GACGTTGTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCAAAGT 3719 Query 21158 TTTGACAAATATTTGCAT 21175 ||||| || |||||||| Sbjct 3720 CTTGACGAAGATTTGCAT 3737 >seq3571 Length=7344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045 |||| || ||||| ||||| | ||||| || | ||||| ||||| ||||| || | | Sbjct 6127 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 6186 Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105 | || | ||| |||||| ||| | ||| |||||||| |||||| || || | | Sbjct 6187 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 6246 Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165 ||| || || || ||| || | ||| ||||||||||| |||||||| || |||| Sbjct 6247 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTAACAA 6306 Query 21166 A 21166 | Sbjct 6307 A 6307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422229063360896