Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5020 159 4e-34 seq629 138 1e-27 seq3611 131 2e-25 seq3571 123 3e-23 >seq5020 Length=23815 Score = 159 bits (176), Expect = 4e-34 Identities = 209/286 (73%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | || || Sbjct 18066 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAAATCGATCTC 18125 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| || ||||||| | ||| ||||||| ||||| | |||||| Sbjct 18126 TCCAAAGATCTTCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 18185 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||| || ||||| ||| |||||||||||||||||||| ||||| ||||| Sbjct 18186 CACATCTTGGCTTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTGGTTGAGCGC 18245 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | || ||||| || | ||||| || ||||||||||| || ||||| || Sbjct 18246 TTCAGCGC-CGAAGTGCAAGTCCCTGAGGCTCGCTGCTTCTACGGTTTCCAGATTATGAT 18304 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || || ||| |||||||| ||| Sbjct 18305 GGAGAACATTCACTCCGAGACATACTCTCTCCTGATCGACACATAC 18350 Score = 134 bits (148), Expect = 1e-26 Identities = 306/455 (67%), Gaps = 4/455 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || ||||| || | || | | ||||||| |||||| Sbjct 18467 AGAAGGCCGACTGGGCTCTCAAGTGGATTGCTGACAAGAACTCATCCTTCGGTCAGCGCC 18526 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || |||||||| || || ||||| | ||||| || |||||| |||| || | Sbjct 18527 TCGTTGCCTTCGCTGCTGTTGAGGGTATTTTCTTCAGCGGTGCTTTCGCTTCCATCTTCT 18586 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || ||||||||||| || || |||||| ||||||||| ||||| | | Sbjct 18587 GGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACTTTCTCCAACGAGCTTATCTCTCGTG 18646 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 | |||||||| || |||||||||||| | || | || || | | || || | Sbjct 18647 ATGAGGGTCTTCACACTGACTTTGCCTGTCTCCTTCACTCCCACCTGAAGAACCGCCCCA 18706 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | | | ||| || |||| || || || | ||| || ||||||| Sbjct 18707 GCAAGCAGGTCATTGAGGATATTATCACTGAGGCCGTGGTTTACGAAAAGGAGTTCCTCA 18766 Query 117282 CCGAAGCGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 | || || | | || |||| || || || | || || | | ||| ||| ||||| Sbjct 18767 CTGACGCTCTTCCCTGTGC-CCTCCTCGGCATGAA-CGCCACCCTCATGCAGCAGTACAT 18824 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||||||||| ||| | || || ||| || | | || ||| |||||| | | Sbjct 18825 TGAGTTCGTCGCTGACCGCCTCCTCGTCGCTCTTGGCAACGAGAAGGTGTACAACTCCAC 18884 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 |||||| | ||||| ||| | ||||||| ||| Sbjct 18885 CAACCCTTTCGACTTCATGGAGAACATCTCCCTGG 18919 >seq629 Length=20836 Score = 138 bits (152), Expect = 1e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 19246 AAGATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 19305 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 19306 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 19364 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || || |||| ||| ||||| ||||| || || | |||||||| | |||||| Sbjct 19365 CCAACAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTA 19424 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| | || || || || || Sbjct 19425 CAACATCCAGAAGGAGTCTACCCTCCACCTCGT 19457 >seq3611 Length=65567 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| |||||||| | || |||||| || |||||| | | | |||| ||||| Sbjct 3943 TCACTGGCAAGACCATCACTCTTGAGGTCGAATCCTCCGACACCATCGACAACG-TCAAG 3885 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 ||| |||| ||||| |||||||| ||| |||| || || || || |||| ||| ||| Sbjct 3884 TCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCTGGC 3825 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | |||||||| ||||||||||||||||||||| | || || Sbjct 3824 AAGCAGCTTGAGGATGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAATCTACCCTC 3765 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || | ||| | | ||||| Sbjct 3764 CACCTGGTTCTCCGCCTCCGTGGCGG 3739 Score = 122 bits (134), Expect = 9e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| ||||| ||||||||| | || ||||| ||| | Sbjct 3281 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCCAGC 3222 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| ||||| || ||| |||| || Sbjct 3221 GACACCATTGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCCCCGGATCAA 3162 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||| |||| || | ||||| || | |||||| ||| Sbjct 3161 CAGCGCCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAC 3102 Query 40870 ATCCAGAAGGAG 40881 |||||||||||| Sbjct 3101 ATCCAGAAGGAG 3090 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| |||||||| | || || || | | Sbjct 3737 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTTGAGTCGTCT 3678 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| ||| |||| || || |||||||| ||| |||| || Sbjct 3677 GACACTATCGACAACG-TCAAGTCAAAGATTCAGGATAAGGAGGGCATTCCCCCGGATCA 3619 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| || || ||||| || || | ||||| ||| ||||||||| Sbjct 3618 ACAGCGCCTGATCTTCGCTGGTAAGCAGCTTGAGGATGGTCGCACTCTCTCCGACTACAA 3559 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || ||||| Sbjct 3558 CATCCAGAAGGAGTCTACTCTTCACCTAGT 3529 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| || || | | Sbjct 3509 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCT 3450 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || |||| || || ||||| || || |||| || Sbjct 3449 GACACCATCGACAACG-TGAAGAGCAAGATTCAGGATAAGGAGGGTATTCCACCGGATCA 3391 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | ||| || || ||||| || || | ||||| || | ||||||||| Sbjct 3390 ACAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGAGCGACTACAA 3331 Query 40869 CATCCAGAAGGAG 40881 ||||||||||||| Sbjct 3330 CATCCAGAAGGAG 3318 >seq3571 Length=7344 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 || || || ||| | || ||||| ||||||||| |||| ||||| || | |||| | | Sbjct 6307 TTTGTTAAGACGTTAACTGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 6248 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| ||||||| || || || Sbjct 6247 GACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTG 6188 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | ||||||||| ||||||||||||||||||| Sbjct 6187 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 6128 Query 40879 G 40879 | Sbjct 6127 G 6127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515181485954560