Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3611 136 3e-27 seq629 116 3e-21 seq3571 98.7 9e-16 >seq3611 Length=65567 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| ||| ||| || || |||||||| ||||||| |||||| |||||| Sbjct 3300 CACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTC 3359 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| | || || ||||| ||||| || || || |||||||| || Sbjct 3360 AAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTG 3419 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| |||||| | ||| ||||||| || | ||| || Sbjct 3420 AATCTTGCTCTTCACGTTGTCGATGGTGTCAGATGACTCAACCTCGAGAGTGATCGTCTT 3479 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||| || || || || ||||| Sbjct 3480 GCCGGTCAGAGTCTTGACGAAGATTTGCAT 3509 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| ||| ||| || || ||||| || ||||||| |||||| |||||| Sbjct 3072 CACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCATCCTC 3131 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| |||| || ||||| ||||| || || || ||||||||||| Sbjct 3132 CAACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTG 3191 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||||||||| | ||| | || || Sbjct 3192 GATCTTGCTCTTCACATTGTCAATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTT 3251 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || || || ||||| ||||||||| Sbjct 3252 GCCGGTGAGCGTCTTGACAAAGATCTGCATG 3282 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| ||| | |||||| |||||| ||||| || ||| Sbjct 3541 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCAAGCTGCTTACCA 3600 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || ||||| ||||| || || ||||||||||| || ||| ||| || Sbjct 3601 GCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCCTGAATCTTTGACTTG 3660 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||| ||||| | || | || |||||||||| ||| Sbjct 3661 ACGTTGTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTC 3720 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 3721 TTGACGAAGATTTGCAT 3737 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| ||||| || || || |||||||| ||| | ||||| |||||| Sbjct 3757 ACCAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCA 3816 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || ||||| ||||| || || |||||||||||||| | Sbjct 3817 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGA 3876 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | |||| |||||| | | |||||||| | || | || ||| Sbjct 3877 ATCTTTGACTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCAAGAGTGATGGTCTTG 3936 Query 118710 CCGGT 118714 || || Sbjct 3937 CCAGT 3941 >seq629 Length=20836 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || || |||||||| ||||||| ||||| |||||| ||||| Sbjct 19452 GTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTG 19393 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| |||| || ||||| || || || || |||||||||||||| || || Sbjct 19392 CTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 19333 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | ||| ||||| | ||| | || || || || Sbjct 19332 GGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGT 19273 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 19272 GAGGGTCTTCACGAAGATCTGCAT 19249 >seq3571 Length=7344 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | ||||| |||||| ||||| || |||||| |||| Sbjct 6129 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 6188 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || ||||| || || || || |||||||||||||| || || || || | ||| Sbjct 6189 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 6248 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||||| | ||||||||||| ||| | || ||||| || | || || ||||| Sbjct 6249 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTAACAAA 6307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433799437524352