Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq3618 116 8e-21 seq3299 109 1e-18 >seq3618 Length=19201 Score = 116 bits (128), Expect = 8e-21 Identities = 223/322 (69%), Gaps = 10/322 (3%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 |||||| |||||| | |||| | ||||| | ||| | | ||||| ||||| || Sbjct 2592 CTGGACTCCGCGATCGTGTACGACCGTGATTTCAACTACCAATACTTTGGCTTCAAGACC 2533 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 |||||| ||| || || ||||| | | |||||||| || || || ||||||||| Sbjct 2532 CTGGAGCGATCATACCTGCTCAAGCTCAACGGCAAGATTGTTGAGCGTCCACAGCACATG 2473 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGTGCTCGAGACG 248958 | ||||| || |||||||| || | || ||||| | ||| |||| | ||||| Sbjct 2472 ATTATGCGCGTCGCTGTCGGCAT---CTGGGGTGACAATATTGAGCGCGTTATTGAGACC 2416 Query 248959 TACACCGGAATGA-GTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGG 249017 |||| | ||| | | | | | | || || ||| |||| ||||||||||| || || Sbjct 2415 TACAACCTCATGTCGAGCAAGTTTT-TCACTCACGCCTCACCCACGCTCTTCAATGCTGG 2357 Query 249018 TACCG-TCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCG 249076 |||| |||| |||||| || ||||||||| | | |||| |||| ||| | | Sbjct 2356 TACCCCTCAAGC-TCAGCTATCGTCTTGCTTTCTTGTCGACATGAAAGATGACAGCATTG 2298 Query 249077 ACGGCATTTATGACACGCTTAA 249098 | ||||| ||||||||||| || Sbjct 2297 ATGGCATCTATGACACGCTCAA 2276 >seq3299 Length=3505 Score = 109 bits (120), Expect = 1e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059 ||| || ||| | || || ||||||||||||| || || |||||||| || ||||| || Sbjct 568 CCTCCCCCATCTCCTCCTCTACGGTCCTCCCGGTACCGGGAAGACGTCCACGATCCTCGC 509 Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119 || || || | | | || | || ||||||| | | |||||||||||||| || Sbjct 508 CCTCGCGCGGCGCATCTACGGTGCGGCGAACATGCGGCAAATGGTGCTCGAGCTGAATGC 449 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCA 254172 ||| ||||| || || | ||||| |||||||| |||||||||| ||| ||| Sbjct 448 TTCCGACGAGCGTGGCATTGACGTGGTCCGCGAGCAGATCAAGACGTTCGCCA 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073685835307008