Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5020 114 3e-20 seq3618 100 6e-16 >seq5020 Length=23815 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||| ||||| ||||| || || ||||| || ||||| ||||| ||||| |||||| Sbjct 18529 GTTGCCTTCGCTGCTGTTGAGGGTATTTTCTTCAGCGGTGCTTTCGCTTCCATCTTCTGG 18588 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | ||||||||||||| | |||||| ||| | || ||| | || Sbjct 18589 CTCAAGAAGCGTGGCCTCATGCCTGGTCTCACTTTCTCCAACGAGCTTATCTCTCGTGAT 18648 Query 102038 GAAGGTCTTCATCGCGACTTTGCATG 102063 || |||||||| |||||||| || Sbjct 18649 GAGGGTCTTCACACTGACTTTGCCTG 18674 >seq3618 Length=19201 Score = 100 bits (110), Expect = 6e-16 Identities = 188/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833 |||| | || ||| | || ||||| | |||||||| || || ||| || || Sbjct 2225 TGAACATTGAGGCCAATGCCACCAGCCATTTTGGAGATCATAGCGCAAGTCTTGAGCGTG 2284 Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGG 94893 ||||| || || |||||||| ||||||| | | | | ||| ||||| || || || || Sbjct 2285 TCATAGATGCCATCAATGCTGTCATCTTTCATGTCGACAAGAAAGCAAGACGATAGCTGA 2344 Query 94894 GGTGTGACTGTT-CCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952 | | ||| | | ||| ||| || || ||||| || || || || ||| | | ||||| Sbjct 2345 GCT-TGAGGGGTACCAGCATTGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGA 2403 Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGAT-GTCTGATCCGTGAATGCCGACAGCCA 95011 |||||| | || || ||||| || | || | | | || | ||||||||||| | Sbjct 2404 CATGAGGTTGTAGGTCTCAATAACGCGCTCAATATTGTCACCCCAG-ATGCCGACAGCGA 2462 Query 95012 CACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 | ||||||||||||| ||| || |||||||| Sbjct 2463 CGCGCATAATCATGTGCTGTGGACGCTCAAC 2493 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 94390 TTACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACG 94449 || || ||||| || ||| || ||||||||||| |||| ||| || || |||| | | Sbjct 1841 TTGCCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTCCTCACCATAGCAG 1900 Query 94450 TCGGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC--- 94506 |||| ||||||||||||||| | || ||||| || | ||| || ||| ||| Sbjct 1901 TCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCA---CTCGCCATTTTTCTCG 1957 Query 94507 ACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 || | || |||||||||||| | | ||| | ||| |||||||||| Sbjct 1958 ACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATC 2004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989509751512480