Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq3443 338 1e-88 seq5617 324 3e-84 seq3523 208 2e-49 seq430 147 5e-31 seq3549 138 3e-28 >seq3443 Length=456 Score = 338 bits (374), Expect = 1e-88 Identities = 321/409 (78%), Gaps = 11/409 (3%) Strand=Plus/Minus Query 22631 GGCTGGAGTGACAGCGGACTGGTCGACAAGGGCACCTACACCGTCGACGAAACCGAGCAC 22690 || ||||| |||| ||| ||||| ||||| | ||||||||||||||| ||||||||||| Sbjct 456 GGTTGGAGCGACACCGGCCTGGTGGACAAAGACACCTACACCGTCGATGAAACCGAGCAT 397 Query 22691 AGCGGCGCGCCGGACGTGCTCAGCATCCGCGCCCGCTCAGCGGACCTGCGCAAGGGCCTG 22750 ||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct 396 AGCGGTGCGCCGGACGTGCTCAGCATCCGCGCCCGCTCTGCCGACCTGCGCAAAGGCCTG 337 Query 22751 AAGGTCAAGCGCGAACGCAGTTGGAGCAGCCCGAAGACGCTGGGCGACGTGCTCACCGAC 22810 ||| |||||| || ||||||||||||| | | | || |||||||| || |||| Sbjct 336 AAGACCAAGCGTGAGCGCAGTTGGAGCAACACCCA---CCTCGGCGACGTCCTGGGCGAC 280 Query 22811 ATCGCCCTCGGCAACAACCT----GAAGCCGGTGCTCGCGCCGGCGCTGGCGGGCCTGCC 22866 ||||| || ||||| ||| | || |||| | ||| |||| || | || Sbjct 279 ATCGCACTGGGCAATGGCCTCACCGCCACCATTGCTGGAGCC----CTGGACGGGTTACC 224 Query 22867 GATCCTGCAGCTGGACCAGGCCAACGAGTCCGACGCCAACCTGCTGACACGCCTGGGCGA 22926 ||||||||| |||||||||||||||| || |||||||||||| | | ||| | || || Sbjct 223 CATCCTGCAGTTGGACCAGGCCAACGAATCAGACGCCAACCTGATCAGCCGCGTCGGGGA 164 Query 22927 GGACTTCGATGCGGTGGCCACCGTGAAAGCCGGCTGCCTGCTCTGCCTGCCGGCCGGTGG 22986 || |||||||| |||| |||||| || ||||| || ||||| |||||||| || || || Sbjct 163 AGAGTTCGATGCCGTGGTCACCGTCAAGGCCGGTTGTCTGCTATGCCTGCCAGCGGGGGG 104 Query 22987 CGGCAAGACTGCCAGCGGCCTGGCGCTGCCGCACATCAACCTCACCCGC 23035 ||||||||| |||| |||| | |||||||| |||| |||||| ||| Sbjct 103 CGGCAAGACGGCCACCGGCGCCGAACTGCCGCATATCACCCTCACTCGC 55 >seq5617 Length=361 Score = 324 bits (358), Expect = 3e-84 Identities = 281/349 (81%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 9026 GGCGGCTATGCCGGCGGCACCGCCGAGCACCAGCGCCTGGCGAACGCTCGCCAGATCGAC 9085 |||||||||||||||||||| || ||||||||||||||| | || || ||||||| Sbjct 357 GGCGGCTATGCCGGCGGCACTGCTGAGCACCAGCGCCTGAGTCATGCGCGTTTGATCGAC 298 Query 9086 GATACCGCCGCCCTGGAGTCGGCCAGTTGGGGCGCCTTCCAGATCATGGGGTTCCACTGG 9145 || |||||||| |||||||| ||| ||||| || ||||||||||||||||| |||||| Sbjct 297 GACACCGCCGCGCTGGAGTCCGCCTCCTGGGGTGCATTCCAGATCATGGGGTTTCACTGG 238 Query 9146 CAGCGCCTGGGCTACGTCAGCGTGCAGGCCTTCGCCGAGTCCATGGGGCGTAGCGAGTCG 9205 |||||||||||||| | |||||||||| | |||| |||| |||| | | ||||||| Sbjct 237 CAGCGCCTGGGCTATGCCAGCGTGCAGACATTCGTCGAGGACATGAGCGCTGGCGAGTCT 178 Query 9206 GCTCAGTTCGAAGCGTTCGTCCGCTTCATCGACACCGACCCGGCGCTACACAAGGCGCTG 9265 ||||||| |||||||| || |||||| | |||||||||| || || |||||| || Sbjct 177 CAGCAGTTCGCCGCGTTCGTGCGTTTCATCCAGACCGACCCGGTTCTGCATAAGGCGTTG 118 Query 9266 AAGGCTCGAAAATGGGCCGACTTCGCCCGCCTCTACAACGGCCCCGACTACAAGCGGAAC 9325 ||||| || |||||| |||| ||||| |||||||||||||| |||||| |||| ||| Sbjct 117 AAGGCCCGCAAATGGTCCGAATTCGCGACGCTCTACAACGGCCCGGACTACCAGCGAAAC 58 Query 9326 CTCTACGACACCAAGCTCGCGCGAGCCTACGAGCAACACGCCAACTGCG 9374 || ||||||| ||||||| ||| |||||||||| || || |||||| Sbjct 57 CTATACGACATCAAGCTCCAGCGCGCCTACGAGCGGCATGCGGACTGCG 9 >seq3523 Length=323 Score = 208 bits (230), Expect = 2e-49 Identities = 238/320 (74%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 18273 CACCCTGCCCCCGCTGGCCCGCAAGATGGAGGCCTTCCGCGGGGGCGGCATGAACGGCCC 18332 |||||||||| || || ||||| |||||| ||| ||||| | ||||||| |||||| Sbjct 320 CACCCTGCCCGACCTCGCGCGCAAAATGGAGTCCTGGCGCGGCGCCGGCATGGCCGGCCC 261 Query 18333 GGTCAAGGCCGACCTAGGCTTCGACGATGACGGCATCCAGTTCGAGTGGACCCTCGGCGG 18392 ||| || |||||||| ||| | || | |||||||||||| || |||||||||||||| Sbjct 260 GGTAAAAGCCGACCTGGGCCACAGCGCCGCCGGCATCCAGTTGGAATGGACCCTCGGCGG 201 Query 18393 CCTGGATCTGACAGCCCTCAAGCAGTACGGCGCAGTCAGTGCCAACGGCGTCATGCTGCG 18452 || || || | ||||| ||||||||| | || |||| |||||| |||||| Sbjct 200 GCTCGACCTCATCGCCCTGCGCCAGTACGGCACCACCAACGCCAGCGGCGTGCCGCTGCG 141 Query 18453 CTTCGCCGGCTCATTCCAGCAAGACGATACCGGCGAAGTCACGTCCGTCGAAATCGTCGT 18512 ||||||||| | | ||||| ||||| |||| ||| | ||| ||| ||| | | Sbjct 140 CTTCGCCGGTGCCTACCAGCGCGACGACGACGGCAGCGTCTCCGCCGGTGAAGTCGGCAT 81 Query 18513 TCGCGGCCGGCACGAGACCATCGAAATGGGTGACGCCCAGCCCGGCGAAGACACCGAGCA 18572 || ||||| ||||| | | | | || |||||| |||||||||||||||||||||| Sbjct 80 GCGTGGCCGCCACGAAAGCTACAGCTTCGGCGACGCCGAGCCCGGCGAAGACACCGAGCA 21 Query 18573 CAAGATCACCACCACCTGCA 18592 || ||||||||||||||| Sbjct 20 CACCCTCACCACCACCTGCA 1 >seq430 Length=315 Score = 147 bits (162), Expect = 5e-31 Identities = 206/284 (73%), Gaps = 5/284 (2%) Strand=Plus/Plus Query 12516 CGCCATGGCCCTCATGCGCTGGGAACCGCGCATCCGCCTGAGCCGTGTCCAGATCACCGG 12575 || |||||| || ||||||||||| || || ||| ||||||||| || ||| || || Sbjct 31 CGTCATGGCGCTGATGCGCTGGGAGCCCCGTATCACCCTGAGCCGCGTGCAGTTCCAGGG 90 Query 12576 CCAGAACCTGGCCGGCCAGGTGCTCA-TGGAGATTGACGCCACCCTGGTGGACAGCAACG 12634 | | |||| || || | ||| |||| || || | | | | || || ||||||| Sbjct 91 CGCCACCCTGCAAGGGCAAGCA-TCACTGGACATCGAGGGAAGCATCGTCGATAGCAACG 149 Query 12635 AGCCGCACAACCTGAGCATCCCCCTGCAGATGGGCGCCAGCGCATGACAACGAACTTCGT 12694 |||||| | ||||||| | || ||| | | || | |||||||| || | ||||| Sbjct 150 AGCCGCTGAGCCTGAGCGTGCCGCTGAACCTTGGGGGTGGCGCATGA--ACTCA-TTCGT 206 Query 12695 CGCCATCGACCTCAGCCAGTTGCCGCCACCACACGCGGTGGAGCAGCTGGACTACGAGCA 12754 ||| || ||||| ||||| | || | || | | || ||||| | || |||||||| Sbjct 207 CGCGATTGACCTGGGCCAGCTCCCTGCGCCCGAAGTCGTAGAGCAAATTGATTACGAGCA 266 Query 12755 GATACTCGCCGAGCGCAAGGCCTACGCCATCAGCCTCTGGCCGG 12798 ||| ||||||||||||||||| |||||||||||||||||| ||| Sbjct 267 GATCCTCGCCGAGCGCAAGGCATACGCCATCAGCCTCTGGTCGG 310 >seq3549 Length=386 Score = 138 bits (152), Expect = 3e-28 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 7329 ACTGGTGCAGCTGTATCTGCGCGCAGTGCAGTCTGCCACCGCCGCCGAAGTGGCCGAGCG 7388 ||||||||| || || | ||||| | | | || |||| |||||| ||| ||||| Sbjct 334 ACTGGTGCACCTCTACCGCCGCGCCATCGAAGCCGCGACCGGCGCCGAGGTGTGTGAGCG 275 Query 7389 CTACCGCTGGTACGACACCACCACCAGCGGCAACGACAAGGCCCAGGACATCGCAACCAC 7448 |||||||| ||||||||||||| |||||||||| | || ||| | ||| || | | | Sbjct 274 CTACCGCTCCTACGACACCACCAACAGCGGCAACCAGAACGCCGAAGACCTCACGCCAAA 215 Query 7449 CATCGACGACTACCGCCGCGACCAGCGCTGGGCGATCCGCGACTTTCTCAAGCGTC-CCC 7507 ||||||||||||||||||||| ||||||||| | || ||||| || | | || || Sbjct 214 TATCGACGACTACCGCCGCGACTTGCGCTGGGCCGTGCGTGACTTCCT-AGGAATCAACC 156 Query 7508 GCACGACGGTGGAGCTGATCTGATG 7532 |||| || |||||| |||| ||||| Sbjct 155 GCACCACCGTGGAGTTGATTTGATG 131 Score = 111 bits (122), Expect = 4e-20 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 7747 CCAGAGCGACACCGTCGAGGCGCTGTGCTGGCGGCACTACGGTCGCACCGCCGGCGTGAC 7806 ||||| ||||||||| || || ||||||||||| |||||||| ||| ||||||| ||||| Sbjct 110 CCAGAACGACACCGTTGACGCCCTGTGCTGGCGTCACTACGGCCGCCCCGCCGGTGTGAC 51 Query 7807 CGAGGCGGTCCTCGAGGCGAACCACGGCCTGGCCGA 7842 ||||||||| ||||| || |||| ||||| ||| || Sbjct 50 CGAGGCGGTACTCGACGCCAACCCCGGCCAGGCAGA 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113726490909824