Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3618 217 2e-51 seq5020 102 1e-16 >seq3618 Length=19201 Score = 217 bits (240), Expect = 2e-51 Identities = 799/1235 (65%), Gaps = 46/1235 (4%) Strand=Plus/Plus Query 62675 TAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCT 62734 ||| ||| ||| ||||| || |||||||||| ||| || || || | || || || Sbjct 1360 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCAGGCGA 1419 Query 62735 ATCAAATGGATAATTTAAGAG-AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGA 62793 || || || ||| |||| || || ||||| || | ||||||||||| | ||||| Sbjct 1420 CTCGAAAGGC-AATCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCGA 1478 Query 62794 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 62853 | || | || | | | || | | || || || | |||||| | || | ||| | Sbjct 1479 TGGGCCGGTGACGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCGA 1538 Query 62854 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62913 |||| || |||||||| | || | |||| | || || | ||| || || || | Sbjct 1539 TAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCGA 1598 Query 62914 ATCGCCCATCTATTACAAACATGTTCAATGCA-ACAGATGCCAGA---------TTACAC 62963 | | |||| || | | || | || ||| ||||| |||||| || || Sbjct 1599 AGCATGCATC-AT--CGTAGTTGATAAAGGCAGACAGA-GCCAGAGAAGCAAGGTTGCAA 1654 Query 62964 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 63023 || || ||||| | || | | | ||| | || |||||||||||||| || | | Sbjct 1655 ACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGG 1714 Query 63024 ATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 63083 || || || | || | || || ||||| ||| || || ||||| || || |||||| Sbjct 1715 ATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAAT 1774 Query 63084 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 63143 ||| ||||||| ||| |||| | || | |||| | ||| | | ||||||| || Sbjct 1775 GGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTTTGAGCCTTGATG 1834 Query 63144 ATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCC 63203 | ||| | | || || ||||| |||||| || || || ||| | Sbjct 1835 GTGCGCTTGCCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTCAC 1892 Query 63204 CAAA-CATTGTCCAAT-CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63261 || | || | ||| | ||| || |||| |||||||| | | |||||| || | | Sbjct 1893 CATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCATTTT 1952 Query 63262 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTC 63321 || || || ||||| |||||||| |||||||||||||| | || ||||| | | | Sbjct 1953 TCTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGGGCAC 2012 Query 63322 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63381 | ||||| || || ||||| |||||||||||| | | | || || |||| Sbjct 2013 GAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAGTGCC 2072 Query 63382 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63441 | ||||| | ||| ||||| | | ||||| || || || || || || || | ||| | Sbjct 2073 AGGGTTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTGCCACCTTGGTCAACGTAGC 2132 Query 63442 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTAC 63501 || ||||| || | || | | ||| || | || || || || | || ||||| | Sbjct 2133 GGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTGGTGC 2192 Query 63502 CGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGC 63559 ||| || || ||| | || ||||| | |||| || || || || || || Sbjct 2193 CGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCACCAGC 2250 Query 63560 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATC 63619 |||||| ||||| | ||||| || | ||||||||||||||| || ||||| ||||| Sbjct 2251 CATTTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGTCATC 2310 Query 63620 GATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGAGTAGTTCCCGCATTAAA 63676 |||||| | |||| ||| |||| | | ||| ||| || || ||||| || Sbjct 2311 TTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCATTGAA 2367 Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736 | || || || ||||| || || | || || | || ||||| ||||||||| | Sbjct 2368 GAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAATAAC 2427 Query 63737 TGAGTCTATAT------CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 63790 || |||| |||| |||| || || ||||| ||||| | ||||||||| Sbjct 2428 GCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGTGCTG 2481 Query 63791 AGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 63850 || | |||||||| ||| ||| | || | || ||| ||| |||| || || || Sbjct 2482 TGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCTTGAA 2541 Query 63851 ACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 63883 ||||| || | ||| ||||| || || ||||| Sbjct 2542 GCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2574 >seq5020 Length=23815 Score = 102 bits (112), Expect = 1e-16 Identities = 140/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| |||||||| || | | || | ||||| || || ||||| || ||||| ||||| Sbjct 18660 GTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGGCC 18601 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| || ||||| || ||||||||||| | ||| ||||| || || || || || Sbjct 18600 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAAATACCCTCAACAGC 18541 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGC 33772 ||| ||||||| || | || || | | | ||||| |||||||| |||| Sbjct 18540 AGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGCAATCCACTTGAGAGC 18481 Query 33773 CCAATCGGCCTTCTT 33787 ||| ||||||||||| Sbjct 18480 CCAGTCGGCCTTCTT 18466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629771497351680