Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3618 226 4e-54 seq5020 98.7 1e-15 >seq3618 Length=19201 Score = 226 bits (250), Expect = 4e-54 Identities = 808/1240 (65%), Gaps = 56/1240 (5%) Strand=Plus/Plus Query 79347 TAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCT 79406 ||| || ||| ||||| || || || |||| ||| ||||| || | || || |||| Sbjct 1360 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 1418 Query 79407 A-TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 79464 | || || || ||| |||| || || ||||| || | ||||||||||| | |||| Sbjct 1419 ACTCGAAAGGC-AATCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCG 1477 Query 79465 ATAGGTCTATGTCTCTTATTAGAAATTTCA-GCTTCTGGAATAGGATAATAATTAATATC 79523 || || | || | | | || | || | || || || | |||||| | || | ||| Sbjct 1478 ATGGGCCGGTGACGCATGTT-GCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATC 1536 Query 79524 TATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATC 79583 ||||| || |||||||| | || | |||| | || || | || || || || Sbjct 1537 GATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTC 1596 Query 79584 AAATCGTCCATCTATTACAAACATGTTCAACGC-GACAGATGCCAGA---------TTAC 79633 || | | |||| || | | || | || || |||||| |||||| || | Sbjct 1597 GAAGCATGCATC-AT--CGTAGTTGATAAAGGCAGACAGA-GCCAGAGAAGCAAGGTTGC 1652 Query 79634 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACT 79693 |||| || ||||| | || | | | ||| | || || |||||||| ||||| | Sbjct 1653 AAACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGC 1712 Query 79694 TAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 79753 || || || | || | || || ||||| ||| || || ||||| || || |||| Sbjct 1713 GGATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGA 1772 Query 79754 ACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA 79813 | ||| ||||||| ||| |||| | || | |||| | ||| | | ||||||| | Sbjct 1773 ATGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTTTGAGCCTTGA 1832 Query 79814 TTATAGACTTGTATCTCTTT---TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 79870 | | |||| | ||| || || ||||| | || ||| || || || Sbjct 1833 TGGTGCGCTTG---CCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC-- 1887 Query 79871 CTCCCCAAA-CA-TCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCC 79928 ||| ||| | || ||| | | ||||| || || | ||||||||| | | |||||| || Sbjct 1888 CTCACCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCC 1947 Query 79929 ATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 79988 || | || || || ||||| |||||||| |||||||||||||| | || ||||| | Sbjct 1948 ATTTTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACG 2007 Query 79989 GGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 80048 || | | |||||| || || ||||| |||||||||||| | | | || || Sbjct 2008 GGCACGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGA 2067 Query 80049 ATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTAT 80108 ||||| ||||| | ||| ||||| | | || || || || || || || || || | Sbjct 2068 GTGCCAGGGTTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTGCCACCTTGGTCAAC 2127 Query 80109 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATT 80168 ||| | || ||||| || | || | | ||| || | || |||||||| || || || Sbjct 2128 GTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTT 2187 Query 80169 GGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCC 80226 ||| |||| || || ||| | || ||||| | |||| || || || || Sbjct 2188 GGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCA 2245 Query 80227 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTA 80286 || |||||||| ||||| | ||||| || | ||| ||||||||||| || ||||| Sbjct 2246 CCAGCCATTTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTG 2305 Query 80287 TCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCA 80343 ||||| |||||| | |||| ||| |||| | | ||| || || || ||| Sbjct 2306 TCATCTTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCA 2362 Query 80344 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 80403 || || | || || || ||||| || || | || |||| || ||||| |||||| Sbjct 2363 TTGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCA 2422 Query 80404 ATAGCTGATTCTATAT------CCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 ||| | || |||| |||| |||| || || ||||| ||||| | |||| Sbjct 2423 ATAACGCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATG 2476 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 ||||| || | ||||| |||||| || | || | || ||| ||| |||| || Sbjct 2477 TGCTGTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTC 2536 Query 80518 TTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 80555 || || ||||| || | ||| ||||| || || ||||| Sbjct 2537 TTGAAGCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2574 >seq5020 Length=23815 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||| |||||||| || | | || || |||||||| || ||||| || ||||| ||||| Sbjct 18660 GTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGGCC 18601 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093 |||||| || ||||| || ||||| || || | || ||||| || || || || || Sbjct 18600 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAAATACCCTCAACAGC 18541 Query 50094 GGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTCATGTATCCACTTTTGAGC 50150 || |||||||| || | || || | | | ||||| |||||||| |||| Sbjct 18540 AGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGCAATCCACTTGAGAGC 18481 Query 50151 CCAATCGGCCTTCTT 50165 ||| ||||||||||| Sbjct 18480 CCAGTCGGCCTTCTT 18466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718216222723840