Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3618 217 2e-51 seq5020 89.7 7e-13 >seq3618 Length=19201 Score = 217 bits (240), Expect = 2e-51 Identities = 792/1222 (65%), Gaps = 46/1222 (4%) Strand=Plus/Plus Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||| || || || |||| ||| ||||| || | || || || || || || || Sbjct 1373 TAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCAGGCGACTCGAAAGGC-AA 1431 Query 71503 TTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCT 71561 | |||| || || ||||| || | |||||||| || | |||||| || | ||| | Sbjct 1432 TCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCGATGGGCCGGTGACG 1491 Query 71562 CTTATTAGAAATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 | | || | || | || || || | |||||| | || | ||| ||||| || |||| Sbjct 1492 CATGTT-GCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCGATAATCTTGTTGA 1550 Query 71621 GATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC-- 71678 |||| | || | |||| | || || | || || || || || | |||| Sbjct 1551 GATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCGAAGCATGCATCAT 1610 Query 71679 --TATT--ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 71734 || | | ||| | || || | ||| || || || ||||| || ||||| | || Sbjct 1611 CGTAGTTGATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAAACAGCAACCTCGTCAG 1670 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | | ||| | || || ||||||||||| || | ||| || || | || | Sbjct 1671 GAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGGATTGTACCAAGGTTCT 1730 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 || || ||||| ||| || || ||||| || || || || ||| ||||||| ||| Sbjct 1731 TCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAATGGATTACCAGTCTCAG 1790 Query 71855 TCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCT 71914 |||| | || | |||| | ||| | | ||||||| || | |||| | || Sbjct 1791 TCTGTGCCTCAAGGATCGAGTACCAAAGCTTTTGAGCCTTGATGGTGCGCTTG---CCCT 1847 Query 71915 TT---TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCA-AGCATT-GTC 71969 | || || ||||| | || ||| || || || ||| ||| |||| | | | Sbjct 1848 TGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTCACCATAGCAGTCGGC 1905 Query 71970 TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTT 72029 | ||||| || ||||| |||||||| | || |||||| |||| | | || || || Sbjct 1906 AAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCATTTTTCTCGACACGCTT 1965 Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 72089 ||| |||||||| |||||||||||||| | || ||||| | || | | |||||| || Sbjct 1966 CATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGGGCACGAACCTCCTCTTT 2025 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || ||||| |||||||||||| | | | || || ||||| ||||| | ||| Sbjct 2026 GCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAGTGCCAGGGTTCAAGGTA 2085 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 ||||| | | || || || || || || || || || | ||| | || ||||| || Sbjct 2086 AATGGCGAAGGCACCAGGACGCTTATTGCCACCTTGGTCAACGTAGCGGGCAGTGTTGTT 2145 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 | || | | ||| || | || |||||||| | || ||||| |||| || || Sbjct 2146 GAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTGGTGCCGGCAATGTAAGA 2205 Query 72270 TCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 72327 ||| | || ||||| || |||| || || || || || |||||||| ||||| Sbjct 2206 GCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCACCAGCCATTTTGGAGATC 2263 Query 72328 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 72387 | ||||| || | ||| ||||||||||| || || || ||||| |||||| | Sbjct 2264 ATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGTCATCTTTCATGTCGACA 2323 Query 72388 AGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 72444 |||| ||| |||| | | ||| || || || ||||| || | || || || Sbjct 2324 AGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCATTGAAGAGCGTGGGTGAG 2380 Query 72445 GCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT-- 72502 ||||| || || | || |||| || ||||| ||||||||| | || |||| Sbjct 2381 GCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAATAACGCGCTCAATATTG 2440 Query 72503 ----CCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558 |||| |||| || || ||||| ||||| | ||| ||||| || | ||||| Sbjct 2441 TCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGTGCTGTGGACGCTCAACA 2494 Query 72559 ATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 72618 |||||| || | || | || ||| ||| |||| || || || ||||| || | | Sbjct 2495 ATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCTTGAAGCCAAAGTATTGG 2554 Query 72619 TA--TGAAAAGTCTCGTTCGTA 72638 || ||||| || || ||||| Sbjct 2555 TAGTTGAAA--TCACGGTCGTA 2574 >seq5020 Length=23815 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||| ||||||||||| | | || | |||||||| || ||||| || ||||| ||||| Sbjct 18660 GTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGGCC 18601 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 |||||| || ||||| || || || || || | || ||||| || || || || || Sbjct 18600 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAAATACCCTCAACAGC 18541 Query 42199 CGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCAC-TGTCATGTATCCACTTTTGAGC 42255 || ||||||| || | || || | | | | ||||| |||||||| |||| Sbjct 18540 AGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGCAATCCACTTGAGAGC 18481 Query 42256 CCAATCGGCCTTCTT 42270 ||| ||||||||||| Sbjct 18480 CCAGTCGGCCTTCTT 18466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671090072610560