Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3618 129 9e-25 seq5020 122 1e-22 >seq3618 Length=19201 Score = 129 bits (142), Expect = 9e-25 Identities = 357/542 (66%), Gaps = 4/542 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | ||| |||||| ||||| |||||| | | | ||| || || | || Sbjct 2190 ACCAACGGCACCTCCAATGGCCTTGTGCCTATGCTCCGGGTCTTCAACAACACTGCC-CG 2132 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| || || |||||||| || || || || | ||| | ||| | ||||| || Sbjct 2131 CTACGTTGACCAAGGTGGCAATAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAACCCTG 2072 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||| | ||||| ||||| || |||| | || || ||| |||| || |||| || Sbjct 2071 GCACTCAGACGTCTTTGAGTTCCTCGATCTCCGTAAGAACCATGGCAAAGAGGAGGTTCG 2012 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 ||| | || | || || || ||| | || ||| | ||||||||||| ||| | | Sbjct 2011 TGCCCGTGATCTTTTCCTCGCTCTTTGGATTCCGGATCTCTTCATGAAGCGTGTCGAGAA 1952 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 |||| | |||| || ||||| || | || || || || |||| |||| || Sbjct 1951 AAATGGCGAGTGGACACTCATGTGTCCTAATGAGTGCCCTGGCCTTGCCGACTGCTATGG 1892 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG-ACGAG 97164 || || |||||||| |||| | |||||| |||||| | | | || | Sbjct 1891 TGAGGAATTTGAGGCATTGTACGAGAAGTACGAGAGGGAGGGCAAGGGCAAGCGCACCA- 1833 Query 97165 TCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 || | || | | | || ||| | | ||| | ||| ||| |||||||| | ||| | Sbjct 1832 TCAAGGCTCAAAAGCTTTGGTACTCGATCCTTGAGGCACAGACTGAGACTGGTAATCCAT 1773 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 ||| ||||||||||| | || || || |||||||| || | || || ||| Sbjct 1772 TCATGCTCTACAAGGACGCTTGCAACCGTAAGAGCAACCAGAAGAACCTTGGTACAATCC 1713 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTT 97344 ||||||| || ||||| || || | ||||| | |||| |||||| || |||| Sbjct 1712 GCAGCTCCAACCTTTGCACTGAGATCATCGAGTATTCTGCTCCTGACGAGGTTGCTGTTT 1653 Query 97345 GC 97346 || Sbjct 1652 GC 1651 >seq5020 Length=23815 Score = 122 bits (134), Expect = 1e-22 Identities = 238/341 (70%), Gaps = 18/341 (5%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| ||||||| || ||||| | ||| || ||||||| Sbjct 18066 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAAATCGATCTC 18125 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 ||||| || || |||| ||| | | || ||| || ||| ||||| || || Sbjct 18126 TCCAAAGATCTTCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 18181 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 || ||||| ||||| ||||| || | ||| || || ||||||||||| || || ||||| Sbjct 18182 CTCTCACATCTTGGCTTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTGGTTGA 18241 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATC 125252 || ||| || || | || |||| ||| ||||| ||||| ||||| || Sbjct 18242 -GCGCTTCAGCGCCGAAGTGCAAGTCCCTGAGG-CTCGCTGCTTCTACGGTTTCCAGATT 18299 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT 125312 ||||| |||||| | ||||| || | |||||| ||||| |||| ||||| || Sbjct 18300 ATGATGGAGAACATTCACTCCGAGACATACTCTCTCCTGATCGACACATACATCAAGGAA 18359 Query 125313 C---CGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | | |||||| || || ||||| ||||| || ||||| Sbjct 18360 CAGTCTCAACGT--ACTTAT-CTCTTCAACGCCATTGACAC 18397 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 |||||| | |||| | || || || | || | | || || || ||||| || || || Sbjct 18489 GTGGATTGCTGACAAGAACTCATCCTTCGGTCAGCGCCTCGTTGCCTTCGCTGCTGTTGA 18548 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 ||| || ||||| ||| ||| || ||||||| |||||||||||||| || ||||| Sbjct 18549 GGGTATTTTCTTCAGCGGTGCTTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCAT 18608 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| || || || | |||||| |||| ||||| || ||||| || ||| |||||| Sbjct 18609 GCCTGGTCTCACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACTGACTT 18668 Query 125570 TGCCATTCTACT 125581 |||| ||| || Sbjct 18669 TGCCTGTCTCCT 18680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741004954466560