Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq4017 102 3e-17 seq2362 98.7 4e-16 >seq4017 Length=362 Score = 102 bits (112), Expect = 3e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 3987 CGCCTGCTCTTCGCTGATGTCCTGCAGCCGCTCGACGCGTACGTCGGTGATCTCAAGCAG 4046 |||||| || | ||||||||||||| |||||||||||| ||| |||||||||| ||||| Sbjct 233 CGCCTGGTCGCCACTGATGTCCTGCAACCGCTCGACGCGGACGGCGGTGATCTCCAGCAG 174 Query 4047 GATGCGGGAGGCCCAACGCGGCATATGGATGCTCGGCCG 4085 |||||| |||||| |||| || |||||||| || || Sbjct 173 GATGCGACTGGCCCAGTGCGGTATGTGGATGCTTGGGCG 135 >seq2362 Length=394 Score = 98.7 bits (108), Expect = 4e-16 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 11285 CCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTGC 11344 ||||| |||||||||| | ||||| || |||| ||| || | | || |||||| Sbjct 392 CCCTTGCGCAGGTATTCGCCGGCGATCTCCGCCACTTTGCCGAACATCGACACGCGGTGC 333 Query 11345 CACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGCC 11404 || ||||| ||| || |||||||||||||||||| |||| ||| || || ||| Sbjct 332 CATTCGGTCTTCTCGACCTTCTGGCCGGTCTGCTTGTCGGTCCACTGTTCACTGGTCGCC 273 Query 11405 AGACTGAGGGAGGTGACCGCCTTTCCGCCCGG--GGTAGATCTTGCGTCTGGATCCTGGC 11462 ||||| ||| ||| || || || ||| || ||||| | | || |||||||||| Sbjct 272 AGACTCAGGTTGGTCACGGCGTTGCCGTTAGGCAGGTAG--CGAACCTCGGGATCCTGGC 215 Query 11463 C-CAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCAT 11505 | || | |||||||| || || ||||| || || || ||||| Sbjct 214 CGCACGT-GCCGACCAATATGACTTTGTTAACCCCACGGGCCAT 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208484319412096