Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3618 226 4e-54 seq5020 107 2e-18 >seq3618 Length=19201 Score = 226 bits (250), Expect = 4e-54 Identities = 803/1236 (65%), Gaps = 48/1236 (4%) Strand=Plus/Plus Query 62624 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCT 62683 ||| ||| ||| ||||| || || ||||||| ||| || || || | || || |||| Sbjct 1360 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 1418 Query 62684 A-TCAAATGGATAATTTAAGAG-AATAAACGCGTCCGCTAATCCTTGAACACCAATACCG 62741 | || || || ||| |||| || || ||||| || | ||||||||||| | |||| Sbjct 1419 ACTCGAAAGGC-AATCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCG 1477 Query 62742 ATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 62801 || || | || | | | || | | || || || | |||||| | || | ||| Sbjct 1478 ATGGGCCGGTGACGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCG 1537 Query 62802 ATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA 62861 ||||| || |||||||| | || | |||| | || || | ||| || || || Sbjct 1538 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCG 1597 Query 62862 AATCGCCCATCTATTACAAACATGTTCAAGGCA-ACAGATGCCAGA---------TTACA 62911 || | |||| || | | || | |||||| ||||| |||||| || || Sbjct 1598 AAGCATGCATC-AT--CGTAGTTGATAAAGGCAGACAGA-GCCAGAGAAGCAAGGTTGCA 1653 Query 62912 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 62971 ||| || ||||| | || | | | ||| | || |||||||||||||| || | Sbjct 1654 AACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCG 1713 Query 62972 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63031 ||| || || | || | || || ||||| ||| || || ||||| || || ||||| Sbjct 1714 GATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAA 1773 Query 63032 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 63091 |||| ||||||| ||| |||| | || | |||| | ||| | | ||||||| || Sbjct 1774 TGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTTTGAGCCTTGAT 1833 Query 63092 TATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCC 63151 | ||| | | || || ||||| |||||| || || || ||| Sbjct 1834 GGTGCGCTTGCCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTCA 1891 Query 63152 CCAAA-CATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63209 ||| | || | ||| ||||| || |||| |||||||| | | |||||| || | Sbjct 1892 CCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCATTT 1951 Query 63210 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 63269 | || || || ||||| |||||||| |||||||||||||| | || ||||| | || Sbjct 1952 TTCTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGGGCA 2011 Query 63270 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 63329 | | ||||| || || ||||| |||||||||||| | | | || || ||| Sbjct 2012 CGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAGTGC 2071 Query 63330 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 63389 || ||||| | ||| ||||| | | ||||| || || || || || || || | ||| Sbjct 2072 CAGGGTTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTGCCACCTTGGTCAACGTAG 2131 Query 63390 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTA 63449 | || ||||| || | || | | ||| || | || || || || | || ||||| Sbjct 2132 CGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTGGTG 2191 Query 63450 CCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTG 63507 |||| || || ||| | || ||||| | |||| || || || || || | Sbjct 2192 CCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCACCAG 2249 Query 63508 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCAT 63567 ||||||| ||||| | ||||| || | |||||||||||| || || ||||| |||| Sbjct 2250 CCATTTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGTCAT 2309 Query 63568 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCATTAA 63624 | |||||| | |||| ||| |||| | | ||| || || || ||||| | Sbjct 2310 CTTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCATTGA 2366 Query 63625 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63684 | | || || || ||||| || || | || || | || ||||| ||||||||| Sbjct 2367 AGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAATAA 2426 Query 63685 CTGAGTCTATAT------CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 63738 | || |||| |||| |||| || || ||||| ||||| | |||||||| Sbjct 2427 CGCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGTGCT 2480 Query 63739 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 63798 | || | ||||| |||||| ||| | || | || ||| ||| |||| || || | Sbjct 2481 GTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCTTGA 2540 Query 63799 AACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 63832 | ||||| || | ||| ||||| || || ||||| Sbjct 2541 AGCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2574 >seq5020 Length=23815 Score = 107 bits (118), Expect = 2e-18 Identities = 141/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||| |||||||| || | | || || |||||||| || ||||| || ||||| ||||| Sbjct 18660 GTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGGCC 18601 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| || ||||| || ||||||||||| | || ||||| || || || || || Sbjct 18600 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAAATACCCTCAACAGC 18541 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGC 33494 ||| ||||||| || | || || | | | ||||| |||||||| |||| Sbjct 18540 AGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGCAATCCACTTGAGAGC 18481 Query 33495 CCAATCGGCCTTCTT 33509 ||| ||||||||||| Sbjct 18480 CCAGTCGGCCTTCTT 18466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622901600264960