Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3571 93.3 4e-14 seq3611 87.8 2e-12 seq629 84.2 2e-11 >seq3571 Length=7344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 ||||| || || |||||||| || | || ||| |||| |||||| || ||||||||| Sbjct 6307 TTTGTTAAGACGTTAACTGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 6248 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | ||||| ||||| ||||| || ||||| || || || |||||| | ||| Sbjct 6247 GACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTG 6188 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAA 24178 || | || |||||||| || || |||| | | | | || ||| || ||||| || || Sbjct 6187 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 6129 >seq3611 Length=65567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | || || | || ||||| || |||||||||||| | ||||| | Sbjct 3941 ACTGGCAAGACCATCACTCTTGAGGTCGAATCCTCCGACACCATCGACAACGTCAAGTCA 3882 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| ||||| || ||||| || || ||||||||| | ||||| | || |||||| Sbjct 3881 AAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCTGGCAAG 3822 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 || || || |||| | | | | ||| || ||||| || || |||||||| Sbjct 3821 CAGCTTGAGGATGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAATCTAC 3769 >seq629 Length=20836 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || | || ||| | || || ||| | Sbjct 19245 CAAGATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTC 19304 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 |||||||||||| | ||||| ||||| ||||| || ||||| || || || Sbjct 19305 TTCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 19364 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | ||||| | || |||||||| || || |||| | | | | | ||||| || Sbjct 19365 CCAACAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTA 19424 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || ||||| Sbjct 19425 CAACATCCAGAAGGAGTCTAC 19445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429905315467680