Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq252 140 2e-28 seq5287 104 2e-17 seq2349 104 2e-17 >seq252 Length=1118 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 685 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 744 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 745 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 779 >seq5287 Length=57140 Score = 104 bits (114), Expect = 2e-17 Identities = 197/288 (68%), Gaps = 4/288 (1%) Strand=Plus/Minus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCG--CCAAGGTCGAGGGTAAGGGAAACGGT 6257 |||||||||||||| ||| | || ||||| | ||| |||| || |||||||||||| Sbjct 12631 GTTCTACCGCTACAGGATG--GAGCCTCTGCAGACGAAGATCGAAGGAAAGGGAAACGGT 12574 Query 6258 ATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACC 6317 || || ||||||||||||||| ||||| |||||| || | |||| || || | Sbjct 12573 ATCAAGACCGTCATTGTCAACTTGCCTAGCGTCGCTCAGTCCCTCGAGCGACCCCGTAAG 12514 Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377 | | ||||| ||||| | || || || || ||| | || | || ||| Sbjct 12513 TGGATCATCAAATACTTCGGCTTTGAGCTCGGTGCCACGACTCCAGAGGACAAGAAGAAC 12454 Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437 || || | ||| | ||||| | || | |||| |||||||| ||| | || || ||| Sbjct 12453 GATCGTTGGATCATCAACGGGGCCCACGAAGCTGCGAAGCTGCAAGACCTTCTCGATGGC 12394 Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACC 6485 || || |||||||| ||||| | || ||| ||||| |||||| Sbjct 12393 TTCATCAAGAAGTTTGTTCTGTGCCCGGCTTGCCGCAACCCTGAGACC 12346 >seq2349 Length=358 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 212 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 153 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 152 GCCGGTATTTAGCCTTA 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334923294818336