Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01]
5,856 sequences; 32,778,109 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq3618 232 8e-56
seq5020 93.3 5e-14
>seq3618
Length=19201
Score = 232 bits (256), Expect = 8e-56
Identities = 807/1239 (65%), Gaps = 54/1239 (4%)
Strand=Plus/Plus
Query 62479 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCT 62538
||| ||| ||| ||||| || || ||||||| ||| || || || | || || ||||
Sbjct 1360 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 1418
Query 62539 A-TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 62596
| || || || ||| |||| || || ||||| || | ||||||||||| | ||||
Sbjct 1419 ACTCGAAAGGC-AATCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCG 1477
Query 62597 ATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 62656
|| || | || | | | || | | || || || | |||||| | || | |||
Sbjct 1478 ATGGGCCGGTGACGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCG 1537
Query 62657 ATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA 62716
||||| || |||||||| | || | |||| | || || | ||| || || ||
Sbjct 1538 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCG 1597
Query 62717 AATCGCCCATCTATTACAAACATGTTCAATGCA-ACAGATGCCAGA---------TTACA 62766
|| | |||| || | | || | || ||| ||||| |||||| || ||
Sbjct 1598 AAGCATGCATC-AT--CGTAGTTGATAAAGGCAGACAGA-GCCAGAGAAGCAAGGTTGCA 1653
Query 62767 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 62826
||| || ||||| | || | | | ||| | || |||||||||||||| || |
Sbjct 1654 AACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCG 1713
Query 62827 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 62886
||| || || | || | || || ||||| ||| || || ||||| || || |||||
Sbjct 1714 GATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAA 1773
Query 62887 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 62946
|||| ||||||| ||| |||| | || | |||| | ||| | | ||||||| ||
Sbjct 1774 TGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTTTGAGCCTTGAT 1833
Query 62947 TATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTC 63003
| ||| | ||| || || ||||| |||||| || || || |
Sbjct 1834 GGTGCGCTTG---CCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--C 1888
Query 63004 TCCCCAAA-CATT-GTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63061
|| ||| | || | | | || ||||| || |||| |||||||| | | |||||| ||
Sbjct 1889 TCACCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCA 1948
Query 63062 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 63121
| | || || || ||||| |||||||| |||||||||||||| | || ||||| | |
Sbjct 1949 TTTTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGG 2008
Query 63122 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63181
| | | ||||| || || ||||| |||||||||||| | | | || ||
Sbjct 2009 GCACGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAG 2068
Query 63182 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63241
||||| ||||| | ||| ||||| | | ||||| || || || || || || || | |
Sbjct 2069 TGCCAGGGTTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTGCCACCTTGGTCAACG 2128
Query 63242 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 63301
|| | || ||||| || | || | | ||| || | || |||||||| || || |||
Sbjct 2129 TAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTG 2188
Query 63302 GTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCC 63359
|| || | || || ||| | || ||||| | |||| || || || || |
Sbjct 2189 GTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCAC 2246
Query 63360 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 63419
| |||||||| ||||| | ||||| || | ||| ||||||||||| || || || |
Sbjct 2247 CAGCCATTTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGT 2306
Query 63420 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCAT 63476
|||| |||||| | |||| ||| |||| | | ||| || || || ||||
Sbjct 2307 CATCTTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCAT 2363
Query 63477 TAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 63536
| || | || || || |||||||| || | || || | || ||||| |||||||
Sbjct 2364 TGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAA 2423
Query 63537 TAGCTGAGTCTATAT------CCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590
|| | || |||| |||| |||| || || ||||| ||||| | |||||
Sbjct 2424 TAACGCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGT 2477
Query 63591 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63650
|||| || | ||||| |||||| ||| | || | || ||| ||| |||| || |
Sbjct 2478 GCTGTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCT 2537
Query 63651 TAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 63687
| || ||||| || | ||| ||||| || || |||||
Sbjct 2538 TGAAGCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2574
>seq5020
Length=23815
Score = 93.3 bits (102), Expect = 5e-14
Identities = 138/195 (71%), Gaps = 3/195 (2%)
Strand=Plus/Minus
Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734
||| |||||||| || | | || | |||||||| || ||||| || ||||| |||||
Sbjct 18660 GTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGGCC 18601
Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794
|||||| || ||||| || ||||| || || | || |||||||| || || || ||
Sbjct 18600 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAAATACCCTCAACAGC 18541
Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGC 32851
|| ||||||| || | || || | | | ||||| |||||||| ||||
Sbjct 18540 AGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGCAATCCACTTGAGAGC 18481
Query 32852 CCAATCGGCCTTCTT 32866
||| |||||||||||
Sbjct 18480 CCAGTCGGCCTTCTT 18466
Score = 82.4 bits (90), Expect = 1e-10
Identities = 191/285 (67%), Gaps = 5/285 (2%)
Strand=Plus/Minus
Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990
||||| || |||| ||| || | || || |||||||| || || || || ||
Sbjct 18349 TATGTGTCGATCAGGAGAGAGTATGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAAA 18290
Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050
||||||||||| | |||||| | | || ||||| | | || || || | | ||
Sbjct 18289 CCGTAGAAGCAGCGAGCCTCAGGGACTTGCACTTCGGCGCTGAAGCGCTCAACCAGGTTC 18230
Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33110
|| || || || |||||| ||| || || || ||||| | || || || || ||
Sbjct 18229 TCGTTGACGATGCCGTCAGAGGCAGCGAAGAAAGCCAAGATGTGAGAGATGAAGTACTTC 18170
Query 33111 TCGTC-TGGTGTTA---GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 33166
||||| | || | | | || ||||| || | | |||||| || | ||| | ||| ||
Sbjct 18169 TCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGAAGATCTTTGGAGAGATCGATTTCCTC 18111
Query 33167 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
| ||||| || || ||||| ||||| || ||||| | ||||||
Sbjct 18110 GGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGAT 18066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633585618137600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |