Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3618 232 8e-56 seq5020 93.3 5e-14 >seq3618 Length=19201 Score = 232 bits (256), Expect = 8e-56 Identities = 807/1239 (65%), Gaps = 54/1239 (4%) Strand=Plus/Plus Query 62479 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCT 62538 ||| ||| ||| ||||| || || ||||||| ||| || || || | || || |||| Sbjct 1360 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 1418 Query 62539 A-TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 62596 | || || || ||| |||| || || ||||| || | ||||||||||| | |||| Sbjct 1419 ACTCGAAAGGC-AATCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCG 1477 Query 62597 ATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 62656 || || | || | | | || | | || || || | |||||| | || | ||| Sbjct 1478 ATGGGCCGGTGACGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCG 1537 Query 62657 ATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA 62716 ||||| || |||||||| | || | |||| | || || | ||| || || || Sbjct 1538 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCG 1597 Query 62717 AATCGCCCATCTATTACAAACATGTTCAATGCA-ACAGATGCCAGA---------TTACA 62766 || | |||| || | | || | || ||| ||||| |||||| || || Sbjct 1598 AAGCATGCATC-AT--CGTAGTTGATAAAGGCAGACAGA-GCCAGAGAAGCAAGGTTGCA 1653 Query 62767 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 62826 ||| || ||||| | || | | | ||| | || |||||||||||||| || | Sbjct 1654 AACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCG 1713 Query 62827 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 62886 ||| || || | || | || || ||||| ||| || || ||||| || || ||||| Sbjct 1714 GATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAA 1773 Query 62887 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 62946 |||| ||||||| ||| |||| | || | |||| | ||| | | ||||||| || Sbjct 1774 TGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTTTGAGCCTTGAT 1833 Query 62947 TATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTC 63003 | ||| | ||| || || ||||| |||||| || || || | Sbjct 1834 GGTGCGCTTG---CCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--C 1888 Query 63004 TCCCCAAA-CATT-GTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63061 || ||| | || | | | || ||||| || |||| |||||||| | | |||||| || Sbjct 1889 TCACCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCA 1948 Query 63062 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 63121 | | || || || ||||| |||||||| |||||||||||||| | || ||||| | | Sbjct 1949 TTTTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGG 2008 Query 63122 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63181 | | | ||||| || || ||||| |||||||||||| | | | || || Sbjct 2009 GCACGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAG 2068 Query 63182 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63241 ||||| ||||| | ||| ||||| | | ||||| || || || || || || || | | Sbjct 2069 TGCCAGGGTTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTGCCACCTTGGTCAACG 2128 Query 63242 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 63301 || | || ||||| || | || | | ||| || | || |||||||| || || ||| Sbjct 2129 TAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTG 2188 Query 63302 GTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCC 63359 || || | || || ||| | || ||||| | |||| || || || || | Sbjct 2189 GTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCAC 2246 Query 63360 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 63419 | |||||||| ||||| | ||||| || | ||| ||||||||||| || || || | Sbjct 2247 CAGCCATTTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGT 2306 Query 63420 CATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCAT 63476 |||| |||||| | |||| ||| |||| | | ||| || || || |||| Sbjct 2307 CATCTTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCAT 2363 Query 63477 TAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 63536 | || | || || || |||||||| || | || || | || ||||| ||||||| Sbjct 2364 TGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAA 2423 Query 63537 TAGCTGAGTCTATAT------CCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63590 || | || |||| |||| |||| || || ||||| ||||| | ||||| Sbjct 2424 TAACGCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGT 2477 Query 63591 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63650 |||| || | ||||| |||||| ||| | || | || ||| ||| |||| || | Sbjct 2478 GCTGTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCT 2537 Query 63651 TAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 63687 | || ||||| || | ||| ||||| || || ||||| Sbjct 2538 TGAAGCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2574 >seq5020 Length=23815 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 ||| |||||||| || | | || | |||||||| || ||||| || ||||| ||||| Sbjct 18660 GTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGGCC 18601 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794 |||||| || ||||| || ||||| || || | || |||||||| || || || || Sbjct 18600 ACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAAATACCCTCAACAGC 18541 Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGC 32851 || ||||||| || | || || | | | ||||| |||||||| |||| Sbjct 18540 AGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGCAATCCACTTGAGAGC 18481 Query 32852 CCAATCGGCCTTCTT 32866 ||| ||||||||||| Sbjct 18480 CCAGTCGGCCTTCTT 18466 Score = 82.4 bits (90), Expect = 1e-10 Identities = 191/285 (67%), Gaps = 5/285 (2%) Strand=Plus/Minus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 ||||| || |||| ||| || | || || |||||||| || || || || || Sbjct 18349 TATGTGTCGATCAGGAGAGAGTATGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAAA 18290 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050 ||||||||||| | |||||| | | || ||||| | | || || || | | || Sbjct 18289 CCGTAGAAGCAGCGAGCCTCAGGGACTTGCACTTCGGCGCTGAAGCGCTCAACCAGGTTC 18230 Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33110 || || || || |||||| ||| || || || ||||| | || || || || || Sbjct 18229 TCGTTGACGATGCCGTCAGAGGCAGCGAAGAAAGCCAAGATGTGAGAGATGAAGTACTTC 18170 Query 33111 TCGTC-TGGTGTTA---GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 33166 ||||| | || | | | || ||||| || | | |||||| || | ||| | ||| || Sbjct 18169 TCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGAAGATCTTTGGAGAGATCGATTTCCTC 18111 Query 33167 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 | ||||| || || ||||| ||||| || ||||| | |||||| Sbjct 18110 GGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGAT 18066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633585618137600