Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3611 127 2e-24 seq3571 116 3e-21 seq3618 114 1e-20 seq629 111 1e-19 >seq3611 Length=65567 Score = 127 bits (140), Expect = 2e-24 Identities = 139/184 (76%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 22236 AACTTTA---ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGA 22292 ||||||| || || || || |||||||||| || ||| || |||| ||| | ||| | Sbjct 3951 AACTTTAGTCACTGGCAAGACCATCACTCTTGAGGTCGAATCCTCCGACACCATCGACAA 3892 Query 22293 TATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATT 22352 |||| ||| ||||| ||||||||||| ||||| || |||||||| || || || || Sbjct 3891 CGTCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTT 3832 Query 22353 TGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATC 22412 || ||||| ||| | |||||| |||||| | ||||| |||||||| || || ||||| Sbjct 3831 CGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAATC 3772 Query 22413 CACC 22416 ||| Sbjct 3771 TACC 3768 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || || || || ||| | Sbjct 3281 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCCAGC 3222 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||||||||| || |||||| Sbjct 3221 GACACCATTGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCCCCGGATCAA 3162 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||||| |||||| ||||| | ||| || ||| Sbjct 3161 CAGCGCCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAC 3102 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 3101 ATCCAGAAGGA 3091 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | ||||| || ||| ||||||| || || || | | Sbjct 3509 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCT 3450 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || ||||| || ||||||||||||||||| |||||| Sbjct 3449 GACACCATCGACAACGTGAAGAGCAAGATTCAGGATAAGGAGGGTATTCCACCGGATCAA 3390 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| |||||| | ||| |||||| Sbjct 3389 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGAGCGACTACAAC 3330 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 3329 ATCCAGAAGGA 3319 >seq3571 Length=7344 Score = 116 bits (128), Expect = 3e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 |||||||| || ||||| || || || |||| || || || || || | || ||| | Sbjct 6307 TTTGTTAAGACGTTAACTGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 6248 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || || || ||||||||||| ||||| || || ||||| || || Sbjct 6247 GACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTG 6188 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || ||||| ||| | |||||| ||||||| ||||||| |||||||| || || Sbjct 6187 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 6129 >seq3618 Length=19201 Score = 114 bits (126), Expect = 1e-20 Identities = 194/278 (70%), Gaps = 5/278 (2%) Strand=Plus/Plus Query 130102 AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCC 130161 || || ||||| || | | ||| | |||||| ||||||| ||||| || | || || Sbjct 2042 AGATCGAGGAACTCAAAGACGTCTGAGTGCCAGGGTTCAAGGTAAATGGCGAAGGCACCA 2101 Query 130162 TTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATT 130218 || || ||| ||||||||||||| ||| | | |||||| |||| || | ||| Sbjct 2102 GGACGCTTATTGCCACCTTGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATA 2161 Query 130219 GCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACG 130278 | | | | || |||| |||||||| |||| ||||| || |||| |||||||| Sbjct 2162 GGCACAAGGCCATTGGAGGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATT 2221 Query 130279 TTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAA-TCGCGTAG 130337 ||||| | || || ||||| || | | ||| || |||| |||||| || | || Sbjct 2222 CGGTGAACATTGAGGCCAATGCCACCAGCCATTTTGGAGATCATAGCGCAAGTCTTG-AG 2280 Query 130338 CGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGT 130375 ||| ||||| |||||| | || ||||| ||||| |||| Sbjct 2281 CGTGTCATAGATGCCATCAATGCTGTCATCTTTCATGT 2318 >seq629 Length=20836 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || ||||| || |||| ||||| ||||| | Sbjct 19246 AAGATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 19305 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| ||||| || || Sbjct 19306 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 19365 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| || || || || || ||||| ||| | |||||| ||||||| | ||| ||| Sbjct 19366 CAACAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTAC 19425 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || || ||| Sbjct 19426 AACATCCAGAAGGAGTCTACC 19446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419698044012640