Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5020 147 4e-30 seq5051 100 6e-16 seq4277 89.7 1e-12 >seq5020 Length=23815 Score = 147 bits (162), Expect = 4e-30 Identities = 291/426 (68%), Gaps = 10/426 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| |||| |||||| |||| ||||| ||||||||||||||| ||||| ||| Sbjct 18941 TCGAAGAAGTTAGTCTTGCCACCCAGGGAGATGTTCTCCATGAAGTCGAAAGGGTTGGTG 18882 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| | |||||| || |||| || |||||| || || ||||| | Sbjct 18881 GAGTTGTACACCTTCTCGTTGCCAAGAGCGACGAGGAGGCGGTCAGCGACGAACTCAATG 18822 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | ||||||||| | | ||| |||| || ||| || | Sbjct 18821 TACTGCTGCATGAGGGTGGCGTTCATGCCGAGGAGGGCACAGGGAAGAGCGTCAGTGAGG 18762 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGA 251798 || |||||||||| | || ||||| | ||| ||| | ||||| | | | | Sbjct 18761 AACTCCTTTTCGTAAACCACGGCCTCAGTGATAATATCCTCAATGACCTGCTTGCTGGGG 18702 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | ||||| ||| | |||| ||||| | |||| | ||| |||||||| || Sbjct 18701 C----GGTTCTTCAGGTGGGAGTGAAGGAGACAGGCAAAGTCAGTGTGAAGACCCTCATC 18646 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||| | ||||||||| | | || |||||||| | ||||| ||| ||||||| Sbjct 18645 ACGAGAGATAAGCTCGTTGGAGAAAGTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCA 18586 Query 251919 GAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 |||||| | || |||| | || ||| | | |||||| ||| | | ||||| | Sbjct 18585 GAAGATGGAAGCGAAAGCA-CCGCTGAAGAAAATACCCTCAACAGCAGCGAAGGCAACGA 18527 Query 251978 GGCGCT 251983 |||||| Sbjct 18526 GGCGCT 18521 >seq5051 Length=36640 Score = 100 bits (110), Expect = 6e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || |||||||||||||| || ||| ||||| |||| | | || Sbjct 24518 CTCACTCCCGTATGCGCGGTCTTTCTGGTGGTCAGCGTGTCAAGACTGTCCTTGCTGCTT 24577 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||||| ||||| ||||||| |||||||||||||| ||||| || ||||| Sbjct 24578 GCTCT-TGGCAACGTCCTCATCTGATCGTCCTCGACGAGCCTACTAACTACCTCGACCGT 24636 Query 280821 GAGAGCCTGGGCGCTCT 280837 || |||||| ||||| Sbjct 24637 GACTCCCTGGGTGCTCT 24653 Score = 93.3 bits (102), Expect = 9e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| |||||| ||||| || |||| ||||| ||||| ||| Sbjct 23116 GGTGAGGATCTTTGCAACTGCACTTTCTCCCTCGCCTACGGTGCCAAGATCCTGCTCAAC 23175 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| ||||||||||| | || || ||||| ||| ||||| || | Sbjct 23176 CAGACTCACCTTCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGCCCCAACGGTTCC 23235 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||| ||||| |||| ||| | || || || || || ||| Sbjct 23236 GGCAAGTCCACTCTCATGCGTGCCATCAACAACGAGCAGGTCGAGGGCTTCCCCAA-GCA 23294 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| || | || |||||||| |||| ||| Sbjct 23295 GAGCGAGGTCAAGACCGTTTTCGTTGAGCACGATCTCGATTCC 23337 >seq4277 Length=24017 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 ||||||| ||||| ||||| || ||||| ||||||||||| | || ||||||||||| Sbjct 17270 TCATTGGCCCCAACGGTGCTGGAAAGTCCACCCTAATCAAGCTTCTCACTGGCGAGACTA 17329 Query 280234 AGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 |||| || ||| |||||| || ||| |||| || | ||| || |||| Sbjct 17330 TTCCCACCACTGGCAAGGTTGAGAAGCACCCTAACCTGCGTATCGGCTACATCAAGCAGC 17389 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGC 280353 | || | | ||| |||||| || || || | ||| || ||||| ||| | ||||||| Sbjct 17390 ATGCCCTTGAGCACGTCGAGATGCATCTCGAGAAGACGCCCAACCAGTACCTCCAGTGGC 17449 Query 280354 GCTATGC 280360 | || || Sbjct 17450 GTTACGC 17456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027759681404896