Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01]
5,856 sequences; 32,778,109 total letters
Query= NC_009382.1
Length=38760
Score E
Sequences producing significant alignments: (Bits) Value
seq5617 127 5e-25
seq3549 89.7 1e-13
>seq5617
Length=361
Score = 127 bits (140), Expect = 5e-25
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 10613 TCATGGGATACCACTGGGAGCGGTTGGGGTATCCGAGCGTGCAGGCATTCGCGGACGCCA 10672
||||||| | |||||| |||| |||| ||| | ||||||||| |||||| || | ||
Sbjct 254 TCATGGGGTTTCACTGGCAGCGCCTGGGCTATGCCAGCGTGCAGACATTCGTCGAGGACA 195
Query 10673 TGCAAAGC-GGCGAGGGAGCGCAGCTCGACGCCTTCGTGCGGTTCGTCACCAGTGACCCC 10731
|| | || |||||| |||| ||| ||| |||||||| ||| || | |||||
Sbjct 194 TG-AGCGCTGGCGAGTCTCAGCAGTTCGCCGCGTTCGTGCGTTTCATCCAGACCGACCCG 136
Query 10732 GCCTTGCACAAGGCGCTCACGGGCGGGAAGTGGTCCGCCTTCGCCGCGCTCTACAACGGG 10791
| |||| |||||| | | || | | || ||||||| ||||| |||||||||||||
Sbjct 135 GTTCTGCATAAGGCGTTGAAGGCCCGCAAATGGTCCGAATTCGCGACGCTCTACAACGGC 76
Query 10792 CCGGCCTACAAGGACAACCTGTACGACGTGAAGCTGGCGCGCGCCTTCG 10840
|||| |||| || ||||| |||||| | ||||| |||||||| ||
Sbjct 75 CCGGACTACCAGCGAAACCTATACGACATCAAGCTCCAGCGCGCCTACG 27
>seq3549
Length=386
Score = 89.7 bits (98), Expect = 1e-13
Identities = 100/134 (75%), Gaps = 6/134 (4%)
Strand=Plus/Minus
Query 9112 CGCACCACCGTGGAGCTGATCTGATGCGCGTG------CGGGCGATCCAGGGCGACACCA 9165
||||||||||||||| |||| |||||| ||| || || ||||| |||||||
Sbjct 156 CGCACCACCGTGGAGTTGATTTGATGCCCGTCACCGTCCGCGCCTTCCAGAACGACACCG 97
Query 9166 TCGACGCCATCTGCCGGCGGGTCTACGGCCGCACGGCGAGCGTGACGGAAGCCGTGCTGG 9225
| |||||| | ||| |||| |||||||||| | || | ||||| || || || || |
Sbjct 96 TTGACGCCCTGTGCTGGCGTCACTACGGCCGCCCCGCCGGTGTGACCGAGGCGGTACTCG 37
Query 9226 CCGCCAACCCCGGC 9239
|||||||||||||
Sbjct 36 ACGCCAACCCCGGC 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123901783270784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |