Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3611 141 2e-28 seq5020 113 1e-19 seq629 100 7e-16 seq3571 86.0 1e-11 >seq3611 Length=65567 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| || || |||| || || || ||||| || ||||||| | Sbjct 3511 CCACCGCGGAGACGAAGGACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 3570 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| |||||||| ||| ||| Sbjct 3571 AGAGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGTTG---ATCCGGG 3627 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || |||||||| || || | || ||||| || |||| || ||| || Sbjct 3628 GGAATGCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCA 3687 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||||| |||||||||||| || ||||| Sbjct 3688 ACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 3737 Score = 127 bits (140), Expect = 5e-24 Identities = 171/234 (73%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | || || | || | || || || || ||||| ||||||||| Sbjct 3052 TGGCCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCG 3111 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || ||||| || || || || || || || ||||||||||| |||||||| ||| Sbjct 3112 CTCAGAGTGCGACCATCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGTTG---ATCC 3168 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGA 288419 ||| || || || || |||||||| || ||| ||||| || || || | ||||| || Sbjct 3169 GGGGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCAATGGTGTCGCTGGA 3227 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| ||||| || |||||||| || |||||||| Sbjct 3228 CTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 3281 Score = 125 bits (138), Expect = 2e-23 Identities = 170/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || | || | || || || || ||||| || |||| Sbjct 3279 CATG-CCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGT 3337 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || || ||||| || || || | || || || ||||| ||||| ||||||||| Sbjct 3338 CGCTCAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCG 3397 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || |||||||| || || ||| |||||||| || || | || || Sbjct 3398 GTGGAATACCCTCCTTATCCTGAATCTT-GCTCTTCACGTTGTCGATGGTGTCAGATGAC 3456 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||||||||| |||||||||||||||||||| || ||||| Sbjct 3457 TCAACCTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 3509 Score = 84.2 bits (92), Expect = 5e-11 Identities = 122/171 (71%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| || ||||| || || || | || || || ||||| Sbjct 3774 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAA 3833 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||||| |||||||| ||| ||| || || || || ||||| || || | || || Sbjct 3834 GATCAGGCGCTGTTG---ATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGACTTGAC 3890 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 ||| || || | ||| ||||| || || || ||||| ||||| || || Sbjct 3891 GTTGTCGATGGTGTCGGAGGATTCGACCTCAAGAGTGATGGTCTTGCCAGT 3941 >seq5020 Length=23815 Score = 113 bits (124), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 269111 ACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATC 269170 ||||||| |||||| | ||||||| | || ||| | | |||| ||||| ||| | Sbjct 18749 ACGAAAAGGAGTTCCTCACTGACGCTCTTCCCTGTGCCCTCCTCGGCATGAACGCCACCC 18808 Query 269171 TCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGA 269230 ||||| | || || || || ||||| ||||| || || || || || || | |||| Sbjct 18809 TCATGCAGCAGTACATTGAGTTCGTCGCTGACCGCCTCCTCGTCGCTCTTGGCAACGAGA 18868 Query 269231 AAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGA 269290 | |||||||| || | || || |||| ||| ||||| || || || | || |||| Sbjct 18869 AGGTGTACAACTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGA 18928 Query 269291 CGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 | ||||||||||| ||||||||| |||||| || ||||||| ||| Sbjct 18929 CTAACTTCTTCGAGAAGCGTGTCGCCGACTACCAGAAGGCTGGTGTCATG 18978 >seq629 Length=20836 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | || || || ||||| || |||||| Sbjct 19475 CCACCACGAAGGCGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 19416 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| |||||||| || ||| Sbjct 19415 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTG---GTCCGGG 19359 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | ||| || || Sbjct 19358 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCC 19299 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 19298 ACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 19249 >seq3571 Length=7344 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| ||| ||||| || || || | || || || ||||||||| Sbjct 6129 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 6188 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || ||| || || || || |||||||| |||| || || || Sbjct 6189 AGGCGCTGTTG---GTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTG 6245 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| ||||| || || | ||||| || Sbjct 6246 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTAACA 6305 Query 288463 AA 288464 || Sbjct 6306 AA 6307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179565890530368