Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3618 246 3e-60 >seq3618 Length=19201 Score = 246 bits (272), Expect = 3e-60 Identities = 605/915 (66%), Gaps = 2/915 (0%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| || |||||| || ||||| |||||| | | ||| Sbjct 2559 AACTACCAATACTTTGGCTTCAAGACCCTGGAGCGATCATACCTGCTCAAGCTCAACGGC 2500 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| || || || || | ||||||||||| |||| || || || Sbjct 2499 AAGATTGTTGAGCGTCCACAGCACATGATTATGCGCGTCGCTGTCGGCATCTGGGGTGAC 2440 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 | || | ||| | | | | || |||| | |||| | || ||| Sbjct 2439 AATATTGAGCGCGTTATTGAGACCTACAACCTCATGTCGAGCAAGTTTTTCACTCACGCC 2380 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTG-TTTCCTGAT 93953 | || || || ||||| || || ||||| | ||| | || || || |||| || Sbjct 2379 TCACCCACGCTCTTCAATGCTGGTACCCCTCAAGCTCAGCTATCGTCTTGCTTTCTTGTC 2320 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | || | ||| ||| || || | |||| |||||| || || | || Sbjct 2319 GAC-ATGAAAGATGACAGCATTGATGGCATCTATGACACGCTCAAGACTTGCGCTATGAT 2261 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| ||| || || || || || ||| ||| ||| | || || | || || || Sbjct 2260 CTCCAAAATGGCTGGTGGCATTGGCCTCAATGTTCACCGAATTCGGGCTACTGGCTCTTA 2201 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| ||| ||||| ||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 2200 CATTGCCGGCACCAACGGCACCTCCAATGGCCTTGTGCCTATGCTCCGGGTCTTCAACAA 2141 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || |||||||| ||||| ||||| | | | ||| | ||||| | || || Sbjct 2140 CACTGCCCGCTACGTTGACCAAGGTGGCAATAAGCGTCCTGGTGCCTTCGCCATTTACCT 2081 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 || ||||||||| | ||||| | ||| |||| || || |||||||| ||||| || Sbjct 2080 TGAACCCTGGCACTCAGACGTCTTTGAGTTCCTCGATCTCCGTAAGAACCATGGCAAAGA 2021 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | ||| | || || ||| |||||| ||| | || || || || ||||| || Sbjct 2020 GGAGGTTCGTGCCCGTGATCTTTTCCTCGCTCTTTGGATTCCGGATCTCTTCATGAAGCG 1961 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 ||||||||||| || |||| || | ||||| ||||| || || || || |||| Sbjct 1960 TGTCGAGAAAAATGGCGAGTGGACACTCATGTGTCCTAATGAGTGCCCTGGCCTTGCCGA 1901 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 | | ||| | ||||| | ||||| | ||||| | ||||||||| || Sbjct 1900 CTGCTATGGTGAGGAATTTGAGGCATTGTACGAGAAGTACGAGAGGGAGGGCAAGGGCAA 1841 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 | || | ||| ||||| ||| | |||| | || | |||| ||||| || Sbjct 1840 GCGCACCATCAAGGCTCAAAAGCTTTGGTACTCGATCCTTGAGGCACAGACTGAGACTGG 1781 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 || || | ||| | | ||||||| || |||| ||| ||||||| || |||| || Sbjct 1780 TAATCCATTCATGCTCTACAAGGACGCTTGCAACCGTAAGAGCAACCAGAAGAACCTTGG 1721 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||| ||||| || || ||||| ||||| |||||||| || |||| |||||| | Sbjct 1720 TACAATCCGCAGCTCCAACCTTTGCACTGAGATCATCGAGTATTCTGCTCCTGACGAGGT 1661 Query 94614 TGCTGTGTGTAACCT 94628 |||||| || ||||| Sbjct 1660 TGCTGTTTGCAACCT 1646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494686986261760