Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3618 132 5e-26 seq3611 102 8e-17 seq629 102 8e-17 seq5020 93.3 4e-14 >seq3618 Length=19201 Score = 132 bits (146), Expect = 5e-26 Identities = 517/795 (65%), Gaps = 51/795 (6%) Strand=Plus/Plus Query 153383 CTCGTACGGCATGCGCAGCAGCACA-AAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441 |||| | |||| ||||| |||| |||||||| || || || || | |||||| |||| Sbjct 1420 CTCGAAAGGCAATCGCAG-AGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCGA 1478 Query 153442 TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATTGCGATCG 153500 |||| || || | ||||||| | || ||| | | |||||||| || |||| Sbjct 1479 TGGGCCGGTGACGCATGTTGCTGTTACGTGC-CTCAGGGACAGGATAGTGGTTTACATCG 1537 Query 153501 ATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCA 153560 ||||| |||||||| ||||| ||||| |||| || | | | || |||| ||| || Sbjct 1538 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCG 1597 Query 153561 TAGGTCATT--TCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGA 153618 || ||| || ||| | | | | || || | ||| || || || || | Sbjct 1598 AAG--CATGCATCATCGTAGTTGATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAAA 1655 Query 153619 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTG---CTGC--A 153673 | || ||| || | | |||| | |||||| | ||| |||||| |||| | Sbjct 1656 CAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGGA 1715 Query 153674 TTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCAT 153733 || || || | || | ||| ||||| || || ||||| ||||| ||| ||||||| Sbjct 1716 TTGTA-----CCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCAT 1770 Query 153734 GTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT--------AAACCTATGCAGGTCC 153785 | | || || ||||| || | || | ||| ||| || | || || Sbjct 1771 GAATGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTTTGAG--CC 1828 Query 153786 TGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCA 153845 | | | | | | |||| | |||||| |||||||| |||||||| | |||| Sbjct 1829 TT-GATGGTGCGCT-TGCCCTT----GCCCTCCCTCTCGTACTTCTCGTACAATGCCTCA 1882 Query 153846 AACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCAC 153905 || || || || ||||||||||| ||||| || |||| || |||||||| || | |||| Sbjct 1883 AATTCCTCACCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCAC 1942 Query 153906 ATATCGTCGGCGTT---GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATG 153962 ||| | || ||| || |||||| |||||||| | ||| || ||| | Sbjct 1943 ---TCGCCATTTTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAA 1999 Query 153963 AGGTCGCGCGCCTTGCAATCCTCCGC--GCCCATGTTGCGTTTC--AGATTGAGCACGCT 154018 || || || || | | ||||| | ||||| | | || | |||| ||| | Sbjct 2000 AGATCACGGGC---ACGAACCTCCTCTTTGCCATGGTTC-TTACGGAGATCGAGGAACTC 2055 Query 154019 ATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCC 154075 | ||| ||| | |||||||||||||| ||| | ||| | |||||| |||| || || Sbjct 2056 AAAGACGTCTGAGTGCCAGGGTTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTGCC 2115 Query 154076 GCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCT 154135 || || || |||| ||| | | ||||||||||| || | ||| || | ||||| | Sbjct 2116 ACCTTGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATT 2175 Query 154136 TGCGGTGCCGTTGGT 154150 | |||||||||||| Sbjct 2176 GGAGGTGCCGTTGGT 2190 >seq3611 Length=65567 Score = 102 bits (112), Expect = 8e-17 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| ||| || ||||| || || ||||| | | Sbjct 3318 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 3377 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 || || |||||||| ||||| || ||||| || || || ||| | || | || | | Sbjct 3378 AATCAGGCGCTGTTGATCCGGTGGAATACCCTCCTTATC-CTGAATCTTGCTCTTCACGT 3436 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | ||||| ||||||| || | ||| || || |||||||| || Sbjct 3437 TG-TCGATGGTGTCAGATGACTCAACCTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTG 3495 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 3496 ACGAAGATTTGCAT 3509 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||||| || || ||||| | Sbjct 3544 GACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCAAGCTGCTTACCAGCG 3603 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || |||||||| ||||| || || || || || || ||| | |||| || | Sbjct 3604 AAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATC-CTGAATCTTTGACTTGAC 3662 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | |||||| ||||| | || | || || || |||| ||| | Sbjct 3663 GTTG-TCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCT 3721 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 3722 TGACGAAGATTTGCAT 3737 >seq629 Length=20836 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || ||||| || || || || | Sbjct 19442 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 19383 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || |||||||||||||| || || || || ||||| ||| || || | Sbjct 19382 AAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 19323 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | || | || ||||| || || || || Sbjct 19322 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTC 19263 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 19262 ACGAAGATCTGCAT 19249 >seq5020 Length=23815 Score = 93.3 bits (102), Expect = 4e-14 Identities = 344/522 (66%), Gaps = 23/522 (4%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| ||||||| ||||| | ||||| | |||||||| | | | | | | Sbjct 18451 GTTCCCTGCATTCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATTGCTGACAAGAACTCA 18510 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCG-GCAG 52444 | | | ||||| | || |||||||| || ||||| | |||| ||| | | | Sbjct 18511 TCCTTCGGTCAGCGCCTCGTTGCCTTCGCTGCTGTTGAGGG--TATTTTCTTCAGCGGTG 18568 Query 52445 CTTT-GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCA 52503 |||| || ||||||| | | || | | ||| | ||||| || || || ||| || Sbjct 18569 CTTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACTTTCTCCA 18628 Query 52504 ACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGA 52563 ||||| | || || || || || || || ||||| |||||||| || ||| || || Sbjct 18629 ACGAGCTTATCTCTCGTGATGAGGGTCTTCACACTGACTTTGCCTGTCTC--CTTCA--- 18683 Query 52564 CGCGCGTGACC-GAAAAATTGGATTCGGACAC-GATCCT-GAGCATGTT--CAAGGAGGC 52618 | | | ||| ||| || | | | | | || | ||| || || || ||||| Sbjct 18684 CTCCC---ACCTGAAGAACCGCCCCAGCAAGCAGGTCATTGAGGATATTATCACTGAGGC 18740 Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678 |||| | |||||||||||| | || | ||| || || | || || |||||||| Sbjct 18741 CGTGGTTTACGAAAAGGAGTTCCTCACTGACGCTCTTCCCTGTGCCCTCCTCGGCATGAA 18800 Query 52679 CGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG 52737 ||| || | |||| ||||||| ||||| || || || || || | || |||| Sbjct 18801 CGC-CACCCTCATGCAGCAGTACATTGAGTTCGTCGCTGACCGCCTCCTCGTC--GCTCT 18857 Query 52738 -GGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795 |||| | | ||| | |||| | ||| || || || || ||| | ||||| || || Sbjct 18858 TGGCAACGAGAAGGTGTACAACTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCT 18917 Query 52796 TGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | |||||||| ||||| ||||||||||| |||| ||| || Sbjct 18918 GGGTGGCAAGACTAACTTCTTCGAGAAGCGTGTCGCCGACTA 18959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496226073592320