Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3618 140 4e-28 >seq3618 Length=19201 Score = 140 bits (154), Expect = 4e-28 Identities = 758/1191 (64%), Gaps = 38/1191 (3%) Strand=Plus/Plus Query 115719 GATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTG 115778 ||| ||||| ||||| |||| ||| ||| | ||| || ||||| | ||| || || Sbjct 922 GATCTCCCAAACAGTCTTGTACAGGGCCTTGACATCGTCAGGGATGTTGGGGATGTTCTG 981 Query 115779 GATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAAT 115835 ||| ||||| || | | |||| | | |||||| | | |||||| ||||||| Sbjct 982 GATGGAGCCGTT---CTCGGCAATGATGCGGTTTTTCATAGCATCTGACCAAAGACCAAG 1038 Query 115836 CTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 115895 | ||||||| || || |||||||| ||||| || || || || Sbjct 1039 TTCAACAAGATCCTTCAGCAGCCATGGGTTGACAACCTGGAACTCGCCAGCAAGCACACG 1098 Query 115896 TCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC 115955 | | | |||||||| | || || |||||||||||||| ||||| || | || || | Sbjct 1099 GCGCTGGTAGATGTTCGAAGTATAGGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGTGA 1158 Query 115956 TGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAAT 116015 ||| ||| ||||||||||| || | || || |||||||| | || | || | || Sbjct 1159 TGTACTGGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTGCGAATGCCATGCTCCTTGAT 1218 Query 116016 GCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAA 116075 | ||||||||| ||||||||| | | | | || | | ||||||||| | Sbjct 1219 TTGCTCCTTGAGGCTGTCCCAGTCCCACAGGTCGCTGGGCTTGACGTTCCACATATCGTA 1278 Query 116076 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 116135 || || ||||||| ||| || || || |||| || | | |||||||||||||||| Sbjct 1279 TTGCAGAATACCTTCGGAGGCAGGGGAACCCTTGAACGACGAGTATGGGCCCTCAACCTT 1338 Query 116136 CGCCAATTC-GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAA--TGC---- 116188 || | || || | || | || ||||| || || |||||||| | ||| Sbjct 1339 GGCGATCTCAACAGAT-GCAGTTAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGT 1397 Query 116189 -GAGCATTCA-TTGCCTTGGCCTCGTCGGAA-TCAAACGCGAGACGGCACAAAATAAATA 116245 |||| ||| |||| | | ||| || ||| ||| ||| || || || Sbjct 1398 TGAGC--TCACGAGCCTCAGGCGACTCGAAAGGCAATCGC-AGA--GC----AAGGAAGG 1448 Query 116246 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 116305 | || ||||| ||||| ||||||| || || || || || | ||| || || || | Sbjct 1449 CGTCAGCGAGGCCTTGAACACCGACACCGATGGGCCGGTGACGCATGTTGCTGTTACGTG 1508 Query 116306 CGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 116362 | ||| || ||||| || |||||||| | | || ||||| |||| Sbjct 1509 C---CTCAGGGACAGGATAGTGGTTTACATCGATAATCTTGTTGAGATTGCGAACCACAA 1565 Query 116363 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAAC-TGCGAGTCTCTTCATTGACATAC 116421 | | || | ||| || ||||| | | | || || | ||| | || | |||| | | Sbjct 1566 CTTGGGTAACTTCGTGCAGCTTCTTGAAGTCGAAGCATGC-ATCATCGTAGTTGATAAAG 1624 Query 116422 TTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCT 116481 || || || | || || || || || |||| ||| || | ||| ||||| Sbjct 1625 GCAGACAGAGCCAGAGAAGCAAGGTTGCAAACAGCAACCTCGTCAGGAGCAGAATACTCG 1684 Query 116482 ATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 116541 || || || || || | || || || || || || | |||||| || || ||| Sbjct 1685 ATGATCTCAGTGCAAAGGTTGGAGCTGCGGATTGTACCAAGGTTCTTCTGGTTGCTCTTA 1744 Query 116542 GTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGA 116601 ||| || || |||||||||||||| |||| | || ||||| || || | || || Sbjct 1745 CGGTTGCAAGCGTCCTTGTAGAGCATGAATGGATTACCAGTCTCAGTCTGTGCCTCAAGG 1804 Query 116602 ATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTA 116660 || | | ||| | | | | | || | | ||| ||| | |||||| |||||| Sbjct 1805 ATCGAGTACCAAAGCTTTTGAGCCTTG-ATGGTGCGCTTGCCCTTGCCCTCCCTCTCGTA 1863 Query 116661 CTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTAT 116719 ||| ||| | |||||||| || ||| ||| ||| || | || || || || || Sbjct 1864 CTTCTCGTACAATGCCTCAAATTCCTCA-CCATAGCAGTCGGCAAGGCCAGGGCACTCAT 1922 Query 116720 CTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 116779 ||||| | ||| | ||| | ||| | ||| || |||||||||||||| || || | Sbjct 1923 TAGGACACATGAGTGTCCACTCGCCATTTTTCTCGACACGCTTCATGAAGAGATCCGGAA 1982 Query 116780 TCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCA 116839 |||| || || ||| ||||| || ||| | || || | || || || ||| | Sbjct 1983 TCCAAAGAGCGAGGAAAAGATCACGGGCACGAACCTCCTCTTTGCCATGGTTCTTACGGA 2042 Query 116840 ACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 || | || || | || || | |||||| ||||| ||||| | |||| Sbjct 2043 GATCGAGGAACTCAAAGACGTCTGAGTGCCAGGGTTCAAGGTAAATGGCGA 2093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613462291272960