Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5020 134 2e-26 seq3618 96.9 6e-15 >seq5020 Length=23815 Score = 134 bits (148), Expect = 2e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 ||||| || |||||||| ||| || ||||| || |||||||| | ||||||||| | Sbjct 18680 AGGAGACAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAA 18621 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 |||| || ||||||| |||||| |||||||| || |||| || ||||||||||| Sbjct 18620 GTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTG 18561 Query 160037 AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTG 160096 || || || ||||| || || || || || ||||| | || ||| || || | ||| || Sbjct 18560 AAGAAAATACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTG 18501 Query 160097 TCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCG-ATGCACGG 160143 ||| ||||| | ||||| || |||||| ||||| ||||| || Sbjct 18500 TCAGCAATCCACTTGAGAGCCCAGTCGGCCTTC-TTGCGAATGCAGGG 18454 >seq3618 Length=19201 Score = 96.9 bits (106), Expect = 6e-15 Identities = 318/485 (66%), Gaps = 12/485 (2%) Strand=Plus/Plus Query 203843 TCCACCGTGAACTGAAT-GGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTACATGCC 203898 || || ||||||||||| || | |||||| |||||| | | ||| ||||||||||| Sbjct 722 TCAACAGTGAACTGAATCGGAG----CGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCC 777 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || || || ||| || | |||||| | | |||| || | |||| Sbjct 778 AGTCTTGAGTCCAAGCTTCCATCCTGTGAAATGCATGCTGGTGATCTTGCCCATGCTGGG 837 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018 ||| |||||| ||||| || ||||| ||||||||||||| | || ||||| || Sbjct 838 GTCCTTCATGTGGATGTTGAGCGACTGAGACTGGTCGATGAAAGCACCACGGTCTGCCGC 897 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTG 204078 ||| | | ||| ||| || |||||||| || |||||| ||| | | || | Sbjct 898 CATCTGCACAATTTGGCGCTGAGAGATCTCCCAAACAGTCTTGTACAGGGCCTTGACATC 957 Query 204079 TTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCG 204137 | ||| | | | | || || ||| |||||||| ||||| || | | | || Sbjct 958 GTCAGGGATGT-TGGGGATGTTCTGGATGGAGCCGTTCTCGGCAATGATGCGGTTTTTCA 1016 Query 204138 TCTCCTCCCCCCACATGCCCAACCTGATC-AGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | | || ||| | | |||| | | | || ||| || ||| ||||||| | | Sbjct 1017 TAGCATCTGACCA-AAGACCAAGTTCAACAAGATCCTTCAGCAGCCATGGGTTGACAACC 1075 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || || || || | ||||| | || | | | ||| || | || || || | Sbjct 1076 TGGAACTCGCCAGCAAGCACACGGCGCTGGTAGATGTTCGAAGTATAGGGCTCAAAGCAC 1135 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 ||||||||||| | |||||| | || ||||| ||||||||||| || || ||||| | Sbjct 1136 TCGTTGTTGCCAAGAATCTGTGATGTACTGGCAGTGGGCATGGGGGCAAGCAGCAGACTG 1195 Query 204317 TTGCG 204321 ||||| Sbjct 1196 TTGCG 1200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795096994639360