Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq629 136 9e-27 seq3611 127 5e-24 >seq629 Length=20836 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| |||||||| || |||||||| |||| ||||||||| || || Sbjct 19469 CGAAGGCGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTG 19410 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || |||||||| || ||||| |||||||| ||| || Sbjct 19409 CGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCC 19350 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 19349 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 19290 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||||||||| || ||||| || || || Sbjct 19289 GTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTG 19252 >seq3611 Length=65567 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| |||||| |||| ||||||||| || ||| Sbjct 3289 CGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTG 3348 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || ||||| || || ||||| || ||||| ||| || Sbjct 3349 CGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGTGGAATACCC 3408 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||| |||| |||||| | || || || || | Sbjct 3409 TCCTTATCCTGAATCTTGCTCTTCACGTTGTCGATGGTGTCAGATGACTCAACCTCGAGA 3468 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || ||||| || || || ||||| Sbjct 3469 GTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATTTG 3506 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| |||||||| |||| ||||||||| | | ||| | ||||| Sbjct 3526 AGGACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCC 3585 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| || ||||| || ||||| ||| || || ||| Sbjct 3586 TCAAGCTGCTTACCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCC 3645 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| ||| |||| ||||| | | || || || | ||||| ||| Sbjct 3646 TGAATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTC 3705 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || || || ||||| Sbjct 3706 TTGCCGGTCAAAGTCTTGACGAAGATTTG 3734 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| |||||| |||| ||| ||||| || ||| Sbjct 3061 CGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTCAGAGTG 3120 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| ||||||||||| || ||||| || ||||| ||| || Sbjct 3121 CGACCATCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATACCC 3180 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| || | |||||| | | || || |||| Sbjct 3181 TCCTTGTCCTGGATCTTGCTCTTCACATTGTCAATGGTGTCGCTGGACTCGACCTCCAGG 3240 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || ||||| || || Sbjct 3241 GTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTG 3278 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || || ||||| |||| ||||||||| | | || | ||||| Sbjct 3754 AGAACCAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 3813 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| || ||||| || ||||| ||| || || ||| Sbjct 3814 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC 3873 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| ||| |||| |||||| | | ||| || || | ||||| ||| Sbjct 3874 TGAATCTTTGACTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCAAGAGTGATGGTC 3933 Query 199598 TTACCCGTGA 199607 || || |||| Sbjct 3934 TTGCCAGTGA 3943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178833145512352