Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5020 140 3e-28 seq629 129 6e-25 seq3571 120 3e-22 seq3611 113 5e-20 >seq5020 Length=23815 Score = 140 bits (154), Expect = 3e-28 Identities = 199/277 (72%), Gaps = 5/277 (2%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| |||||||| ||| || || | || ||||| | ||||||||| || || || Sbjct 18350 GTATGTGTCGATCAGGAGAGAGTATGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAA 18291 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGAT 133285 ||||| ||||| || ||||| || |||||||| | || ||| ||||| ||||| | Sbjct 18290 ACCGTAGAAGCAGCGAGCCTCAGGGACTTGCACTTCG-GCGCTGAAGCGCTCAACCAGGT 18232 Query 133286 TTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGC 133345 | ||||||||||||||||| ||| ||||| || |||| | ||| |||||| | Sbjct 18231 TCTCGTTGACGATGCCGTCAGAGGCAGCGAAGAAAGCCAAGATGTGAGAGATGAAGTACT 18172 Query 133346 GCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCT 133402 ||||| ||||||| ||| | ||||||| | || ||||| || || | |||| Sbjct 18171 TCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGAAGATCTTTGGAGAGATCGATTTCCT 18112 Query 133403 CGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || | ||||| || || |||||||| || |||||||| Sbjct 18111 CGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 18075 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || |||||||| || | ||||| || | || || || |||||| |||||| | Sbjct 18674 CAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGA 18615 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || ||||||||||| || || |||||||| || |||| |||||| || ||||| Sbjct 18614 CCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAA 18555 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACG-TGGCTTCTTTGCTGGC 133073 | ||||| || || ||||| || || ||||||| ||||| | || ||| ||| || Sbjct 18554 ATACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTC-TTGTCAGC 18496 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTT 133100 ||||| || ||||| |||||||| Sbjct 18495 AATCCACTTGAGAGCCCAGTCGGCCTT 18469 >seq629 Length=20836 Score = 129 bits (142), Expect = 6e-25 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 19246 AAGATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 19305 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 19306 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 19364 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| || || | ||| ||||| ||||| || || | |||||||| | |||||| Sbjct 19365 CCAACAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTA 19424 Query 38420 CAACATCCAAAAGGA 38434 ||||||||| ||||| Sbjct 19425 CAACATCCAGAAGGA 19439 >seq3571 Length=7344 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 || || || ||| | || ||||| ||||||||| |||| |||||| || | |||| | | Sbjct 6307 TTTGTTAAGACGTTAACTGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 6248 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 6247 GACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTG 6188 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| ||| Sbjct 6187 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 6128 Query 38433 G 38433 | Sbjct 6127 G 6127 >seq3611 Length=65567 Score = 113 bits (124), Expect = 5e-20 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| || ||||| |||| || ||| | | Sbjct 3509 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCT 3450 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || || | || || ||||| ||||| | || | Sbjct 3449 GACACCATCGACAACG--TGAAGAGCAAGATTCAGGATAAGGAGGGTATTCCACCGGATC 3392 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| || |||| ||| || || ||||| || || | ||||| || | |||||||| Sbjct 3391 AACAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGAGCGACTACA 3332 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| || || || |||||||| ||| Sbjct 3331 ACATCCAGAAGGAGAGTACTCTCCACTTGGTGCTCCGT 3294 Score = 113 bits (124), Expect = 5e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| |||||||| | || ||||| || |||||| | | | |||| | || Sbjct 3943 TCACTGGCAAGACCATCACTCTTGAGGTCGAATCCTCCGACACCATCGACAACG-TCAAG 3885 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 ||| || | ||||| ||||| |||||| | || |||||||| || || | ||| ||| Sbjct 3884 TCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCTGGC 3825 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || || | |||||||| ||||||||||||||| |||||| | || || Sbjct 3824 AAGCAGCTTGAGGATGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAATCTACCCTC 3765 Query 38445 CATTTGGTGCTGCG 38458 || |||| || || Sbjct 3764 CACCTGGTTCTCCG 3751 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||| |||||||| | || || ||| | | Sbjct 3737 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTTGAGTCGTCT 3678 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || ||| || | || || ||||| |||||| | || || Sbjct 3677 GACACTATCGACAACG-TCAAGTCAAAGATTCAGGATAAGGAGGGCATTCCCCCGGATCA 3619 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | ||| || || ||||| || || | ||||| ||| ||||||||| Sbjct 3618 ACAGCGCCTGATCTTCGCTGGTAAGCAGCTTGAGGATGGTCGCACTCTCTCCGACTACAA 3559 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 3558 CATCCAGAAGGA 3547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500136187351040