Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3618 203 4e-47 seq5020 145 9e-30 seq4016 107 2e-18 >seq3618 Length=19201 Score = 203 bits (224), Expect = 4e-47 Identities = 899/1400 (64%), Gaps = 45/1400 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| | ||||| ||||| |||| ||| || || ||||||| ||| Sbjct 2484 CCACAGCACATGATTATGCGCGTCGCTGTCGGCATCTGGGGTGACAATATTGAGCGCGTT 2425 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || ||||| | | |||| ||||| |||| || |||||| Sbjct 2424 ATTGAGACCTACAACCTCATGTCGAGCAAGTTTTTCACTCACGCCTCACCCACGCTCTTC 2365 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || |||||||| || | | || | || ||| || ||| | | | || || || Sbjct 2364 AATGCTGGTACCCCTCAAGCTCAGCTATCGTCTTGCTTTCTTGTCGACATGAAAGATGAC 2305 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAGTGGGCTG 111849 || ||||||| || | ||| |||| || | ||| | | ||||| || ||||| Sbjct 2304 AGCATTGATGGCATCTATGACACGCTCAA-GACT-TGCGCTATGATCTCCAAAATGGCTG 2247 Query 111850 GTGGTATCGGGATGCACATCCAT-GATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 |||| || || | | | || || || | || | ||| ||| || || Sbjct 2246 GTGGCATTGGCCTCAATGTTCACCGAATTCGG-GCTACTGGCTCTTACATTGCCGGCACC 2188 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || || |||| || | || ||||| || || || ||| ||| || ||||| Sbjct 2187 AACGGCACCTCCAATGGCCTTGTGCCTATGCTCCGGGTCTTCAACAACACTGCCCGCTAC 2128 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || |||||| ||| ||||| || | |||| | || ||||| || ||| Sbjct 2127 GTTGACCAAGGTGGCAATAAGCGTCCT---GGTGCCTTCGCCATTTACCTTGAACCCTGG 2071 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||| | || || | |||||||| || | ||| ||||| || | ||||||| || Sbjct 2070 CACTCAGACGTCTTTGAGTTCCTCGATCTCCGTAAGAACCATGGCAAAGAGGAGGTTCGT 2011 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||| ||||| ||| |||||| |||||||| ||||||||||||||| | || ||| | Sbjct 2010 GCCCGTGATCTTTTCCTCGCTCTTTGGATTCCGGATCTCTTCATGAAGCGTGTCGAGAAA 1951 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGG 112201 | |||| | ||| | ||| | ||||| | || || || || |||| ||| | || Sbjct 1950 AATGGCGAGTGGACACTCATGTGTCCTAATGAGTGCCCTGGCCTTGCCGACTGCTAT-GG 1892 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTC--GGGCGACTGCGACG 112259 |||||| ||||| || | ||| |||||||| || | | | | |||| | || || Sbjct 1891 TGAGGAATTTGAGGCATTGTACGAGAAGTACGA-GAGGGAGGGCAAGGGCAAGCGC-ACC 1834 Query 112260 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 | ||| | | ||| | | || || || | || || |||||||||| ||| Sbjct 1833 ATCAAGGCTCAAAAGCTTTGGTACTCGATCCTTGAGGCACAGACTGAGACTGGTAATCCA 1774 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 | ||||| ||||| ||||| || |||| ||||| || || ||||| | ||| ||| Sbjct 1773 TTCATGCTCTACAAGGACGCTTGCAACCGTAAGAGCAACCAGAAGAACCTTGGTACAATC 1714 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 || |||||||| || || || ||| | || | | | | || ||| ||||| Sbjct 1713 CGCAGCTCCAACCTTTGCACTGAGATCATCGAGTATTCTGCTCCTGACGAGGTTGCTGTT 1654 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATG--TGGATCCAGAGACAAAGA--CA-- 112493 || ||||| || || | ||||| || || | || || || | || || Sbjct 1653 TGCAACCTTGCTTCTCTGGCTCT------GTCTGCCTTTAT-CAACTACGATGATGCATG 1601 Query 112494 -TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGT 112552 || || | | || || ||||||||||| || ||| || || |||| | Sbjct 1600 CTTCGACTTCAAGAAGCTGCACGAAGTTACCCAAGTTGTGGTTCGCAATCTCAACAAGAT 1541 Query 112553 TATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCG 112609 ||| ||| ||| || || || |||| || ||||| || ||| | ||||| Sbjct 1540 TATCGATGTAAACCACTATCCTGTCCCTGAG---GCACGTAACAGCAACATGCGTCACCG 1484 Query 112610 TCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCAT 112668 || || ||| ||||||| ||||| ||||| || | ||| || || || || | | Sbjct 1483 GCCCATCGGTGTCGGTGTTCAAGGCCTCGCTGACGCCTTCCTTGCTCTG-CGATTGCCTT 1425 Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 | || || || || || |||| || || |||||||| || || ||||| | Sbjct 1424 TCGAGTCGCCTGAGGCTCGTGAGCTCAACAAGCAGATCTTTGAGACTATTTACCACGCTG 1365 Query 112729 CTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 112788 || | || | ||| | || ||||||| || ||||| | || |||||| Sbjct 1364 CTTTAACTGCATCTGTTGAGATCGCCAAGGTTGAGGGCCCATACTCGTCGTTCAAGGGTT 1305 Query 112789 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCAC 112847 | || || || |||| | || |||| ||||||| |||| || | || ||| | Sbjct 1304 CCCCTGCCTCCGAAGGTATTCTGCAATACGATATGT-GGAACGTCAAGCCCAGCGACCTG 1246 Query 112848 TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 112907 | ||||||||| |||||||| | ||||||||| | || |||| |||||||| || Sbjct 1245 TGGGACTGGGACAGCCTCAAGGAGCAAATCAAGGAGCATGGCATTCGCAACAGTCTGCTG 1186 Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967 | || || ||||| || ||| || |||| || | || || || || |||||||| Sbjct 1185 CTTGCCCCCATGCCCACTGCCAGTACATCACAGATTCTTGGCAACAACGAGTGCTTTGAG 1126 Query 112968 CCCTACACGACGAACATCTA 112987 ||||| || |||||||||| Sbjct 1125 CCCTATACTTCGAACATCTA 1106 >seq5020 Length=23815 Score = 145 bits (160), Expect = 9e-30 Identities = 168/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCG 102167 ||||||| || |||| ||||| || || |||||| | |||||| ||| | |||| | Sbjct 18449 CAGTTCCCTGCATTCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATTGCTGACAAGAACT 18508 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 | | |||| | | |||| ||| | || || || |||||||||||| |||||| ||| Sbjct 18509 CAT-CCTTCGGTCAGCGCCTCGTTGCCTTCGCTGCTGTTGAGGGTATTTTCTTCAGCGGT 18567 Query 102228 TCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 | ||| | || | |||||||||||||| || |||||||| |||||| |||||| Sbjct 18568 GCTTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACTTTCTCC 18627 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||||||||||||||| ||||| || ||| || ||||| Sbjct 18628 AACGAGCTTATCTCTCGTGATGAGGGTCTTCACACTGACTTTGC 18671 >seq4016 Length=25323 Score = 107 bits (118), Expect = 2e-18 Identities = 303/452 (67%), Gaps = 25/452 (6%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || || ||||| | ||| || | ||| | ||||||| | ||||| || | Sbjct 10101 CGATCAAATCGGCCAGGGCGCATGAGAGCCTTATCCAAGATATCAGCACGATTGGTGCCA 10042 Query 15945 GCGATGACAACAATACCTGTTTC--GTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | ||| || | |||||| | | | || || |||||||| || | || ||| | Sbjct 10041 GCCAGGACGACGA--CCTGTTCACGGGTGTTGAAGCCGTCCATCTCCGTGAGAATCTGAT 9984 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGT--TG-CTTTC 16059 | | || || ||||| || || || || | | || || | | || || || | Sbjct 9983 TCAGCGTGGCCTCGCGTTCGTCGTTTCCTC-CAAAGCCCCGGC-CGGAGTCTTGTCTGGC 9926 Query 16060 CC-----ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 || | ||||||||||| || ||||||| |||||| || || | ||| | | Sbjct 9925 CCGGCCAATAGCATCAATCTCGTCGATGAAGATGATGCACGGGGCGTTCTTGCGGCCTTC 9866 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG- 16173 |||||||||| || ||||| | |||||||| || ||||||||||| || | | Sbjct 9865 GGCAAAGAGATCGCGCACACGGGATGGTCCCACACCGACGAACATCTCCACGAACTCAGA 9806 Query 16174 -CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | || || | || |||||| || |||||||| ||| |||| ||||| || Sbjct 9805 TCCGCTGACGCT--GAAGAAGGGAACGCCTGATTCACCGGCAGTGGCCTTTGCGAGCAGT 9748 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA--C 16290 || ||||| || || || || ||||| | ||||| ||||| || || |||||| | Sbjct 9747 GTTTTACCGGTGCCAGGTGGGCCAGCGAGAATAGCACCGCGTGGGATTTTTGCGCCAAGC 9688 Query 16291 TTC-CAAAGTATCTCTCAGGTTGCTT-AAGAA 16320 ||| | || | ||||||| ||||| ||||| Sbjct 9687 TTCTCGAACT---TCTCAGGCTGCTTCAAGAA 9659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620696961656320