Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3618 212 7e-50 seq4016 118 1e-21 seq5020 91.5 2e-13 >seq3618 Length=19201 Score = 212 bits (234), Expect = 7e-50 Identities = 1055/1662 (63%), Gaps = 41/1662 (2%) Strand=Plus/Plus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 |||| || ||| || || ||||| || || ||||| ||| ||||||| | | |||| Sbjct 752 GCCTGCGTGCGCAGGTAGTACATGCCAGTCTTGAGTCCAAGCTTCCATCCTGTGAAATGC 811 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || | || ||| | | || || ||| | ||| | |||||||||||| Sbjct 812 ATGCTGGTGATCTTGCCCATGCTGGGGTCCTTCATGTGGATGTTGAGCGACTGAGACTGG 871 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG-GCTAA----TTT 109573 |||||||| |||||| || |||||||| | | || ||| | ||| | | | Sbjct 872 TCGATGAAAGCACCACGGTCTGCCGCCATCTGCA-----CAATTTGGCGCTGAGAGATCT 926 Query 109574 CCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAG 109633 |||| ||||||||||||| ||||| ||| || || |||| |||||| || || | Sbjct 927 CCCAAACAGTCTTGTACAGGGCCTTGACATCGTCAGGGATGTTGGGGATGTTCTGGATGG 986 Query 109634 AGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGA 109693 |||| | | ||| | | ||||| | | ||||| ||||| | | | Sbjct 987 AGCCGTTCTCGGCAATGATGCGGTTTTTCATAGCATCTGACCAAAGACCAAGTTCAACAA 1046 Query 109694 GATCGTCAACAAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751 |||| | | || ||| |||||| || || || |||||||| || || | Sbjct 1047 GATCCTTCAGCAGCCATGG--GTTGACAACCTGGAACTCGCCAGCAAGCACACGGCGCTG 1104 Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| | || ||||| || || ||||| |||||||| || || |||| || Sbjct 1105 GTAGATGTTCGAAGTATAGGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGTGATGTACT 1164 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTC 109871 || ||||||||||| || | || |||||||| || | || | | ||| | |||| Sbjct 1165 GGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTGCGAATGCCATGCTCCTTGATTTGCTC 1224 Query 109872 ACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGG 109931 | |||||| || | | | || | || | | ||||||||| Sbjct 1225 CTTGAGGCTGTCCCAGTCCCACAGGTCGCTG------GGCTTGACGTTCCACATATCGTA 1278 Query 109932 TTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTC 109991 ||| || | ||| || | ||||| ||||||||||| | ||| | |||||||||| Sbjct 1279 TTGCAGAATACCTTCGGAGGCAGGGGAACCCTTGAACGACGAGTATGGGCCCTCAACCTT 1338 Query 109992 GGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATT 110051 ||| | ||| || || || || || || || ||||||||||| || || || Sbjct 1339 GGCGATCTCAACAGATGCAGTTAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGC---TT 1395 Query 110052 CATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATCCG 110107 |||| |||| ||| | ||||| || | | | || || || || | || | Sbjct 1396 GTTGAGCTCACGAGCCTCAGGCGACTCGAAAGGCA-ATCGCAGAGCAAGGAAGGCGTCAG 1454 Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167 | || || |||||||||| ||| ||||| || || |||||| | || || Sbjct 1455 CGAGGCCTTGAACACCGACACCGATGGGCCGGTGACGCATGTTGCTGTTACGTGCCTCAG 1514 Query 110168 CTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGA 110227 || || || ||| ||||| | | |||||||| |||| | || | Sbjct 1515 GGACAGGATAGTGGTTTACATCGATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAA 1574 Query 110228 TTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTGGGGAGA 110286 ||| || || || | | | ||||| | | | || | || |||| | | | ||| Sbjct 1575 CTTCGTGCAGCTTCTTGAAGTCGAA-GCATGCATCATCGTAGTTGATAAAGGCAGACAGA 1633 Query 110287 GCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCC 110346 || | ||| ||||| ||||| |||| | |||||| | | || || | || || Sbjct 1634 GCCAGAGAAGCAAGGTTGCAAACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCA 1693 Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406 || || | |||||| || || ||| | ||||||||| || || |||||| Sbjct 1694 GTGCAAAGGTTGGAGCTGCGGATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAA 1753 Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466 || ||||| ||||||||| |||| ||||||| || ||||||| || || || | | | Sbjct 1754 GCGTCCTTGTAGAGCATGAATGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTAC 1813 Query 110467 CATACATCGGCGGCGGGGACAGTTGCGTTAGCGA--GACCTTCCTCCTCGTACTTGGTGT 110524 || | | || || || ||| | || | ||| |||| |||||||| || Sbjct 1814 CAAAGCTTTTGAGCCTTGATGGT-GCGCTTGCCCTTGCCCTCCCTC-TCGTACTTCTCGT 1871 Query 110525 ACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGA 110584 |||| |||||||||||| || || || | ||| || || | ||||| | Sbjct 1872 ACAATGCCTCAAATTCCTCACCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACA 1931 Query 110585 AGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCG 110644 ||| | ||| | ||| | ||| || | ||||||||| || || |||||||| | | Sbjct 1932 TGAGTGTCCACTCGCCATTTTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAG 1991 Query 110645 CCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAA 110704 | |||||| |||||| |||| |||| || | || ||||| || || || | | Sbjct 1992 CGAGGAAAAGATCACGGGCACGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGA 2051 Query 110705 AGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---AC 110761 | || | || || |||||||| ||||| || || | |||| || || ||| | Sbjct 2052 ACTCAAAGACGTCTGAGTGCCAGGGTTCAAGGTAAATGGCGAAGGCACCAGGACGCTTAT 2111 Query 110762 GACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTC 110821 || | |||| ||| ||||| || ||| |||||||||| ||||||||| | || | Sbjct 2112 TGCCACCTTGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGC 2171 Query 110822 CATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATAT 110881 ||| ||| || || || || ||| || | | || ||||| ||| | || Sbjct 2172 CATTGGAGGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACAT 2231 Query 110882 GCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTGTACCATA 110939 | ||||| ||||| ||| || || | | ||| | ||| |||| || |||| Sbjct 2232 TGAGGCCAATGCCACCAGCCATTTTGGAGATCATAGCGCA-AGTCT-TGAGCGTGTCATA 2289 Query 110940 AATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACG 110999 || |||||||| || | || || | | ||||||||||| || | ||||| | Sbjct 2290 GATGCCATCAATGCTGTCATCTTTCATGTCGACAAGAAAGCAAGACGATAGCTGAGCTTG 2349 Query 111000 AGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 ||| || || ||||||||||| || |||| || ||| |||| Sbjct 2350 AGGGGTACCAGCATTGAAGAGCGTGGGTGAGGCGTGAGTGAA 2391 >seq4016 Length=25323 Score = 118 bits (130), Expect = 1e-21 Identities = 315/468 (67%), Gaps = 30/468 (6%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||| || || || ||||| | ||||| | ||| | ||||| |||| || || | Sbjct 10101 CGATCAAATCGGCCAGGGCGCATGAGAGCCTTATCCAAGATATCAGCACGATTGGTGCCA 10042 Query 11563 GCAATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || | ||| || | || || ||| ||| ||| |||||||| || ||||||| ||| Sbjct 10041 GCCAGGACGACGA--CCTGT-TCACGGGTGTTGAAGCCGTCCATCTCCGTGAGAATCTGA 9985 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTA--- 11676 || | ||| || || || ||||| || | | || |||| | ||| | Sbjct 9984 TTCAGCGTGGCCTCGCGTTCGTCGTTTCCTC-CAAAGCCCCGGCCGGAGTCTTGTCTGGC 9926 Query 11677 ----CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 || | ||| |||||||| |||||||| | ||| ||||| ||| || |||| Sbjct 9925 CCGGCCAATAGCATCAATCTCGTCGATGAAGATGATGCACGGGGCGTTCTTGCG-GCCT- 9868 Query 11733 TTCG---AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 ||| || || || || ||||| | ||| ||||| ||||||||||| ||||| | Sbjct 9867 -TCGGCAAAGAGATCGCGCACACGGGATGGTCCCACACCGACGAACATCTCCACGAACTC 9809 Query 11790 TG--CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | | || | || ||||| ||||||||| || ||||| || |||| ||||| Sbjct 9808 AGATCCGCTG-ACGCTGAA-GAAGGGAACGCCTGATTCACCGGCAGTGGCCTTTGCGAGC 9751 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || || ||||| || ||||||| |||||||||| || || || ||||| || || ||| Sbjct 9750 AGTGTTTTACCGGTGCCAGGTGGGCCAGCGAGAATAGCACCGCGTGGGATTTTTGCGCCA 9691 Query 11908 --CTTC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 |||| | || | |||||||| ||| | ||||| ||| | |||| Sbjct 9690 AGCTTCTCGAACT---TCTCAGGCTGCTTCAAGAAGTTCACGAACTCC 9646 >seq5020 Length=23815 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || ||||| |||||||| ||||| || ||| || || Sbjct 18672 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACC 18613 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| || | ||||| ||||| ||||||| | ||| || ||||| || Sbjct 18612 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAAAT 18553 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGT---CGA 119670 ||||| ||| ||||| || | || |||| | | |||| ||| ||||| | | Sbjct 18552 ACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGA-CCGAAGGATGAGTTCTTGTCAGCAA 18494 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTT 119695 ||||||||||||||||| |||||| Sbjct 18493 TCCACTTGAGAGCCCAGTCGGCCTT 18469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588932886956800