Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq5617 105 1e-18 >seq5617 Length=361 Score = 105 bits (116), Expect = 1e-18 Identities = 186/266 (70%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 19599 GAGCTTTGCGTCGTACAGATTGCGCGCGTAATCCGGGCCGTTGTAGCCCTTGGCGAACGC 19658 |||||| |||||| || || ||| ||| ||||||||||||||| | | ||||| | Sbjct 40 GAGCTTGATGTCGTATAGGTTTCGCTGGTAGTCCGGGCCGTTGTAGAGCGTCGCGAATTC 99 Query 19659 CGCCCACTTCCTACCCTTCAGCGCGGAAAGCAAGGCCGTGTCGGCCGCGATAAACCGCAC 19718 | ||| || | |||||| ||| | ||| ||| ||||| | ||| || ||||| Sbjct 100 GGACCATTTGCGGGCCTTCAACGCCTTATGCAGAACCGGGTCGGTCTGGATGAAACGCAC 159 Query 19719 GAACGCGTCGAGGTGATCGGCTTCG-CTTCTCTGCATGCACGCGACGAA-ATCGGCGATG 19776 ||||||| ||| || | | ||| | | || |||| | ||||||| || || | | Sbjct 160 GAACGCGGCGAACTGCTGAGACTCGCCAGCGCT-CATGTCCTCGACGAATGTCTGC-ACG 217 Query 19777 CTCGAATAGTCCAGGGCTTGCCAGTGATAGCCCATGATTTGAAACGCGCCCCAGCTCGCC 19836 || | |||| ||||| ||||||||| | |||||||| || || || |||||| || Sbjct 218 CTGGCATAGCCCAGGCGCTGCCAGTGAAACCCCATGATCTGGAATGCACCCCAGGAGGCG 277 Query 19837 GACTCGTGCGAGGCGTCGGTGTCGAT 19862 ||||| ||| |||| | |||||| Sbjct 278 GACTCCAGCGCGGCGGTGTCGTCGAT 303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103285617018688