Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3611 161 2e-34 seq3571 111 3e-19 >seq3611 Length=65567 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| ||||| || || || ||||| |||| ||||| | ||||| || Sbjct 3529 ACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCA 3588 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| || || ||||| || || |||||||| || || || ||| Sbjct 3589 AGCTGCTTACCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCCTGA 3648 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||||||||| || || ||||| || || || ||||| || | ||||| Sbjct 3649 ATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTCTTG 3708 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || ||||| | |||||| Sbjct 3709 CCGGTCAAAGTCTTGACGAAGATTTGCAT 3737 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||| || || || ||||| ||| ||||| | ||||| || ||||| Sbjct 3306 GTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCAAGCTG 3365 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || || || ||||| || || ||||| || || || || ||||| || Sbjct 3366 CTTACCAGCGAAAATCAGGCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGAATCTT 3425 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || |||||||| || || || || || || | |||||| || || Sbjct 3426 GCTCTTCACGTTGTCGATGGTGTCAGATGACTCAACCTCGAGAGTGATCGTCTTGCCGGT 3485 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||| || ||||| | |||||| Sbjct 3486 CAGAGTCTTGACGAAGATTTGCAT 3509 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||| || || || || || ||| ||||| | ||||| || | ||| Sbjct 3078 GTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCATCCTCCAACTG 3137 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || ||||| || || ||||| || || ||||| || || || Sbjct 3138 CTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTGGATCTT 3197 Query 195057 TTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| || || |||||||||| | | || || || || ||||| | ||||| || Sbjct 3198 GCTCTTCACATTGTCAATGGTGTCGCTGGAC--TCGACCTCCAGGGTGATGGTCTTGCCG 3255 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || || | ||||| Sbjct 3256 GTGAGCGTCTTGACAAAGATCTGCAT 3281 >seq3571 Length=7344 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | ||||| || |||||||| || |||||||| Sbjct 6129 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 6188 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || |||||||| || |||||||| || ||||| || || || |||||| || || Sbjct 6189 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 6248 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||||| || || || ||||| | ||||| || || || || || || || Sbjct 6249 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTAACAAA 6307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109398355595552