Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3618 156 5e-33 seq5020 89.7 6e-13 >seq3618 Length=19201 Score = 156 bits (172), Expect = 5e-33 Identities = 553/848 (65%), Gaps = 27/848 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| ||||| | ||||| ||||| |||||||| || || | ||||| || Sbjct 2484 CCACAGCACATGATTATGCGCGTCGCTGTCGGCATCTGGGGTGACAATATTGAGCGCGTT 2425 Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | ||||| ||| || ||||| |||| | | ||| |||||| |||| || |||| Sbjct 2424 ATTGAGACCTACAACCTCATGTCGAGCAAGTTTT--TCACTCACGCCTCACCCACGCTCT 2367 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 ||||||||||||| || | | ||| | || |||||| ||| ||| || || || | Sbjct 2366 TCAATGCTGGTACCCCTCAAGCTCAGCTATCGTCTTGCTTTCTTGTCGACATGAAAGATG 2307 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGC 75447 || || | || ||||||| || || | | | | ||||| | ||||| || ||| Sbjct 2306 ACAGCATTGATGGCATCTATGACACGCTCAAG-ACT-TGCGCTATGATCTCCAAAATGGC 2249 Query 75448 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGAC 75507 ||| || ||||| | | | || | | || | | ||| ||| || || Sbjct 2248 TGGTGGCATTGGCCTCAATGTTCACCGAATTCGGGCTACTGGCTCTTACATTGCCGGCAC 2189 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 || || || |||| || | || ||||| || || || ||| ||| || ||||| Sbjct 2188 CAACGGCACCTCCAATGGCCTTGTGCCTATGCTCCGGGTCTTCAACAACACTGCCCGCTA 2129 Query 75568 TGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATG 75621 || | |||| || ||||| || || |||| | ||| | ||||| || Sbjct 2128 CGTTGACCAAGGTGGCAATAAGCGTCCT---GGTGCCTTCGCCATTTACCTTGAACCCTG 2072 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 ||| | || || | |||||||| || | || ||||| || | || |||| ||| Sbjct 2071 GCACTCAGACGTCTTTGAGTTCCTCGATCTCCGTAAGAACCATGGCAAAGAGGAGGTTCG 2012 Query 75682 GTGTAGAGATCTCTTTTCATCCCTGT--GGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 | ||||| |||| || || | ||||||| || || ||||||||||| || ||| Sbjct 2011 TGCCCGTGATCT--TTTCCTCGCTCTTTGGATTCCGGATCTCTTCATGAAGCGTGTCGAG 1954 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGT 75798 | ||| | ||| | || | ||||| | || || || || ||||| || | Sbjct 1953 AAAAATGGCGAGTGGACACTCATGTGTCCTAATGAGTGCCCTGGCCTTGCCGACTGCTAT 1894 Query 75799 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG-A 75857 || |||||| ||||| || | ||| ||||| || |||||| | | ||| ||| | Sbjct 1893 GG-TGAGGAATTTGAGGCATTGTACGAGAAGTACGAGAGGGAGGGCAAGGGCAA-GCGCA 1836 Query 75858 CTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 | | | || | | | | ||||| | | || || | ||||||| |||||||| | Sbjct 1835 CCAT-CAAGGCTCAAAAGCTTTGGTACTCGATCCTTGAGGCACAGACTGAGACTGGTAAT 1777 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 |||| ||||| |||||||| ||||| ||| ||||| ||||| ||||| | || ||| Sbjct 1776 CCATTCATGCTCTACAAGGACGCTTGCAACCGTAAGAGCAACCAGAAGAACCTTGGTACA 1717 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 ||| ||||| || |||||||| || || | ||||| | | | || ||| ||| Sbjct 1716 ATCCGCAGCTCCAACCTTTGCACTGAGATCATCGAGTATTCTGCTCCTGACGAGGTTGCT 1657 Query 76037 GTTTGCAA 76044 |||||||| Sbjct 1656 GTTTGCAA 1649 >seq5020 Length=23815 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| | || ||| ||| |||| ||| ||||||| |||| Sbjct 18466 AAGAAGGCCGACTGGGCTCTCAAGTGGATTGCTGACAAGAACTCA-TCCTTCGGTCAGCG 18524 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 ||| |||| || || ||| |||||||| |||||| ||| | ||| | || | Sbjct 18525 CCTCGTTGCCTTCGCTGCTGTTGAGGGTATTTTCTTCAGCGGTGCTTTCGCTTCCATCTT 18584 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||| | |||||||| || |||||||| || || ||||| || || ||||| || || Sbjct 18585 CTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACTTTCTCCAACGAGCTTATCTCTCG 18644 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCC 65229 ||||||||||| ||| || |||||| Sbjct 18645 TGATGAGGGTCTTCACACTGACTTTGCC 18672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596525931105280