Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq336 136 1e-26 seq5140 91.5 4e-13 >seq336 Length=33492 Score = 136 bits (150), Expect = 1e-26 Identities = 208/294 (71%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||| | | ||||| |||||||||||||| || |||||| | ||| || ||||| Sbjct 29702 TCTTCAAGAGCCTTGACCAAACGACGCTGAATGTAGCCAGTTTCGGCTGTCTTGACAGCG 29643 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690 |||||||| ||||| |||||||| |||| || ||||| || | || || ||| || Sbjct 29642 GTATCAATGAGACCTTCACGACCAGCCATGGCGTGGAAAAAGAATTCAGTAGG-CGTCAG 29584 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | ||||| |||||||||| ||||| || || || || | ||| |||||| Sbjct 29583 GCCACGCAGGTAGGAGTTCTCAACGAAGCCACGAGCTTCAGGAGAGTAATCGTCCTTGGT 29524 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| || || || | || || | ||| | || || |||||||| ||||| |||| Sbjct 29523 GAAGTGAGGAAGAGTGCGGTACTTGAAACCGAACGGAATGCGCTTTCCTTCAACAATCTG 29464 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||| || | | | ||||||| || ||||| | | | |||||||| || Sbjct 29463 CTGACCGACAAGGGCAGTCATCTGAGAGATATTGATAGAAGAACCCTTGGAACC 29410 Score = 100 bits (110), Expect = 8e-16 Identities = 107/141 (76%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 301812 CAGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 || |||||| | | ||| || |||||| |||| ||||| |||||||| ||||||||| Sbjct 30480 CAAAATTTCCTTGAGACGCGGCACACCAAGGGTAACGTT---CTTGGACGAAACACCAGC 30424 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 |||||||||||| ||||| || | || || | ||||||||||| || || |||| Sbjct 30423 AAAGTGGAAAGTGTTCAGTGTCATCTGTGTGGCGGGCTCACCAATGGACTGGGCAGCAAG 30364 Query 301932 CATACCAACCATTTCTCCTGG 301952 | ||||||||||| || || Sbjct 30363 GACGCCAACCATTTCGCCGGG 30343 >seq5140 Length=28023 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | ||||||||||| | | | || ||||| | ||| |||| || Sbjct 23613 ATGAGTCCACAAATCTCGCACACATGGACTCGGAAGGCGTCAGAAACCTCAAATAGGCGC 23672 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 ||||| |||| | || ||||| | |||||| ||||| ||||||||||| |||||| Sbjct 23673 TCCTTGAGGAAGGCTGCCGCTCCGTGGGCAATCATGCAATCTCGCTCCATTTCTCCGAAA 23732 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 || | |||||||| | || | ||| || ||||||| Sbjct 23733 CGCAAGCCACCATCTCTGGCACGACCTTCTACAGGCTG 23770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471707169525472