Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3618 181 1e-39 seq1079 129 7e-24 seq5020 107 2e-17 >seq3618 Length=19201 Score = 181 bits (200), Expect = 1e-39 Identities = 333/488 (68%), Gaps = 15/488 (3%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| |||||||| || |||| ||| ||||| |||||||| ||||| ||||| ||||| Sbjct 2120 TGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAG 2179 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||||||||| || | ||| | ||| | || || | ||| | | ||| Sbjct 2180 GTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTGAGGCCA 2239 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| || ||| |||||||| | ||||| ||||||||||| |||||||| || Sbjct 2240 ATGCCACCAGCCATTTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCA 2299 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| | |||||||| || |||||||| ||||| || | || | || || Sbjct 2300 ATGCTGTCATCTTTCATGTCGACAAGAAAGCAAGACGATAGCTGAGCTTGAGGGGTACCA 2359 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 || |||||||||||||| | || ||||| |||| | ||||||| || |||||| Sbjct 2360 GCATTGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTC 2419 Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACG 1630425 | | |||||| | | || ||| |||| || ||||| |||||| Sbjct 2420 TCAATAACGCGCTCAA---TATTGTC-----------ACCC-CAGATGCCGACAGCGACG 2464 Query 1630426 CGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGAC 1630485 ||||| | ||||| ||| || ||||| || | |||| | |||| |||||| || Sbjct 2465 CGCATAATCATGTGCTGTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGAT 2524 Query 1630486 CGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGCG 1630545 || || |||| ||| ||||||||| || ||||| ||||||| ||| ||| Sbjct 2525 CGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAATCACGGTCGTACACGATCGCG 2584 Query 1630546 GCGTCGAG 1630553 | ||| || Sbjct 2585 GAGTCCAG 2592 >seq1079 Length=61444 Score = 129 bits (142), Expect = 7e-24 Identities = 91/104 (88%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250 ||||||||| ||||||||||| || |||||| |||| |||||| | |||||||||||||| Sbjct 52706 CAACTACCTGGACATCAAGCCCCTCCTCGATGTTGGCTGCAAGACCGTGGCCAACATGAT 52765 Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 |||||||| |||||||||||||| || ||||| || ||||||| Sbjct 52766 TAAGGGCAAATCGCCCGAGGAGATTCGAAAGACTTTCAACATCA 52809 >seq5020 Length=23815 Score = 107 bits (118), Expect = 2e-17 Identities = 137/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| |||||| ||||| |||||||| | || ||||| Sbjct 18968 GCCTTCTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTAGTCTTGCCACCCAGGGAGATG 18909 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | ||||| ||| ||| || |||||||| Sbjct 18908 TTCTCCATGAAGTCGAAAGGGTTGGTGGAGTTGTACACCTTCTCGTTGCCAAGAGCGACG 18849 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || |||||||| ||||| ||||| |||||||| ||||||| |||||||||||||| Sbjct 18848 --AGGAGGCGGTCAGCGACGAACTCAATGTACTGCTGCATGAGGGTGGCGTTCATGCCGA 18791 Query 868869 TGAGCGC 868875 ||| || Sbjct 18790 GGAGGGC 18784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106658629216352